------------------ - Adjusted Mutect translate to handle new style tumor/normal sample metaheaders. - Adjusted Mutect translate to clarify supported versions of Mutect.
1.1.4
----------------- - Adjusted summarize to ignore phasing when creating consensus GT. - Adjusted Mutect handling to correctly marked phased normal (0|0) as non-somatic. - Removed extraneous fields from JQ_VS_LOW_CONFIDENCE filter metaheader.
1.1.3
----------------- - Adjusted Mutect handling to accommodate either older FA or newer AF allele frequency tags.
1.1.2
----------------- - Adjusted VCF handling to correctly pad optional trailing FORMAT fields - Adjusted Mutect translation to regard PASS as somatic when FilterMutectCalls present in metaheaders.
1.1.1
------------------ - Adjusted Mutect translators to:
- parse normal and tumor designations from SAMPLE metaheaders if available - recognize more variations of Mutect metaheader formats
1.1.0
----------------- - Adjusted *translate* to correctly parse newer versions of Mutect - Updated supported versions for Mutect, Strelka, Varscan - Fixed error in JQ_SUMMARY_DP_AVERAGE tag description