Kmerdb

Latest version: v0.8.10

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0.6.5

This release fixes a bug related to parallelization in the `kmerdb matrix` and `kmerdb distance` functions. Now `.kdb` files passed with a shell splat '`*`' character may be read properly in parallel, and collated properly.

0.6.4

Fixes a bug related to Spearman correlation coefficients and sort order.

0.6.3

This realease contains several improvements to the primary file interfaces in `fileutil.py`, `__init__.py`, `parse.py`, `kmer.py` and others. This is a backwards incompatible release, skipping ahead a major version. You'll need an update `kmerdb` to use the new uint64 features, sort order, and more.

0.5.1

This release cleans up some functionality on `kmerdb view`. It also modifies the code throughout to use unsigned integer64 throughout. Let's see how pervasive the specifcation becomes as we begin to explore the Pearson and Spearman space for the different depths. We'll be really needing another exploratory study regarding high fidelity coverage (100x-200x).

The kdb files can also be sorted, but reading them has become a little bit of a challenge. Will try in the next pull request. This had to be done on master today. The suite deserved a bit of some TLC.

0.3.1

This release focuses on usability and consistent nomenclatures.

bash
kmerdb matrix pass STDIN


This is the standard way to simply reflect a dataframe in its uninterrupted not downscaled integer or real values.

0.2.1

Non-sequitor.

Bump.

If you'd only believe me. ~~

Be around | Bloom

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