* Modified check for ordered pairs to only check the first 100 sequence ids to reduce memory usage. * Move resolve sublists to allow for multiple lists in final output files (resolves error with running with multiple databases).
0.7.8
* Remove temp files from decompression and reformatting after they are no longer needed to save space. * Update SILVA_128_LSUParc_SSUParc_ribosomal_RNA to Version 0.2 * Change to the read mode for the decompress function for bz2 files for python 3 compatibility.
0.7.7alpha
* Changes in the workflow order of TRF and bowtie2 * Add trim-repetitive option flag to remove adapters and overrepresented sequences.
0.7.6
* Add trf install to setup.
0.7.5
* Add option for user to provide the database location (local or remote) with version check.
0.7.4
* Check for order of pairs if trimmomatic is run and reorder if needed (trimmomatic requires ordered pairs). * Allow for bz2 input files.