Latch

Fixed

* Bug where Python 3.8 clients would crash due to a broken type annotation

Changed

* Snakemake
+ Log files are now marked as outputs - this enables rules to use logs of previous rules as inputs

Changed

* `latch mv` now supports glob patterns (with the same restrictions as `latch cp`)

Added

* `latch.registry.record.Record.get_table_id` method for querying the ID of the table containing a given registry record
* `latch.registry.table.Table.get_project_id` method for querying the ID of the project containing a given registry table

Added

* Snakemake
+ Remote register support
+ `download` field for file inputs
+ `config` field for file inputs
+ Blanket support for parameters of any type via the `SnakemakeParameter` class
+ Support for generating a `latch_metadata` directory from a `config.yaml` with `latch generate-metadata`
+ Support for default values for parameters

Changed

* Snakemake
+ JIT register step no longer downloads input files by default
+ `latch_metadata` should now be a module (directory containing an `__init__.py` file), as opposed to just being a file

Added

* Snakemake
+ `directory` modifier for input / outputs
+ Support `temp` by removing from compiled rules. All files / directories are
temporary because they are deleted at the end of each job on Latch.
+ `multiext` output modifier
+ `report` output modifier
+ `params` in rules

Fixed

* Snakemake
+ Replace skipped rules with `Ellipsis`. Supports rules nested in conditionals where previously an empty block was produced.
+ Patched parser to generate compiled code for `workflow.include` calls Compiled workflow.include should carry `print_compilation` keyword (snakemake/snakemake2469)
+ Detect use of `conda` keyword and install in image. This effectively supports wrapper/conda keywords.
+ `Iterable, Generator` cause issues as type hints when imported from `collections.abc` rather than `typing`