Llspy

Latest version: v0.5.1

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0.3.8

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**Fixed:**

* tifffile update broke ability to read tiff bit depth.
* dependency versions now explicity listed

0.3.7

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**Fixed:**

* hotfix: FlashParams filename roi was not getting correctly parsed, causing failure when the calibrated chip size was not 1024 x 512.

0.3.6

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**Added:**

* lots of documentation on the Flash camera artifact and LLSpy camera corrections.
* CLI ``lls compress`` command now has folder recursion and filtering by experiment age. useful for data server maintenance: quickly compress/freeze old data.
* option in gui to delete unregistered files when performing channel registration

**Changed:**

* llspy/parse.py filter functions now allow exclusive filtering in addition to inclusive
* better error message in rename_iters when there is only a single Iteration being processed
* ``lls install`` now accepts llspy_extra.zip file as well as llspy_extra directory

**Fixed:**

* fixed erroneous "each iteration the same number of tiffs" error in rename_iters
* fixed "Cannot create a file" bug in rename_iters when there is only a single position in the acquisition script. (thanks Mathieu)
* (hopefully) fix IndexError in rename_iters in cases where Iter_n does not start at Iter_0.
* fixed IndexError when no *dark*.tif images are present in the camera calibration folder (thanks Mathieu)
* registration was skipping timepoints when the reference wavelength string appeared in the filename (thanks Lin)

0.3.5

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**Added:**

* CLI lls show command: quickly preview LLSdir (MIPS or z-stack) from command line.

**Fixed:**

* bug: reg-preview was not using the just-generated registration file
* many bug fixes related to previewing registration results

0.3.4

0.3.3

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