Added
- First implementation of pipeline interface 'outputs', so pipeline authors can specify items of interest produced by the pipeline.
- Functions and attributes on `Project` to support "outputs" (`interfaces`, `get_interfaces`, `get_outputs`)
Changed
- Start "compute" --> "compute_packages" transition
- `get_logger` moved to `peppy`
Fixed
- Prevent CLI option duplication in pipeline commands generated
- Make functional CLI spec of particular attribute on which to base selection of a subset of a project's samples ([`peppy` 298](https://github.com/pepkit/peppy/issues/298))