M2stitch

Changes

* Migrating to understandable definition of variables (181) yfukai

:package: Dependencies

* Bump sphinx-click from 3.0.2 to 3.0.3 (178) dependabot
* Bump pandas-stubs from 1.2.0.39 to 1.2.0.47 (175) dependabot
* Bump sphinx-click from 3.0.2 to 3.0.3 in /docs (170) dependabot
* Bump pygments from 2.10.0 to 2.11.2 (166) dependabot
* Bump black from 21.10b0 to 21.12b0 (159) dependabot
* Bump sphinx from 4.2.0 to 4.3.2 in /docs (156) dependabot
* Bump mypy from 0.910 to 0.930 (165) dependabot
* Bump actions/download-artifact from 2.0.10 to 2.1.0 (153) dependabot
* Bump virtualenv from 20.10.0 to 20.12.1 in /.github/workflows (154) dependabot
* Bump actions/upload-artifact from 2.2.4 to 2.3.1 (155) dependabot
* Bump pre-commit-hooks from 3.4.0 to 4.1.0 (157) dependabot
* Bump flake8-rst-docstrings from 0.2.3 to 0.2.5 (163) dependabot
* Bump sphinx from 4.3.1 to 4.3.2 (162) dependabot
* Bump numpy from 1.21.4 to 1.21.5 (161) dependabot
* Bump typeguard from 2.13.2 to 2.13.3 (160) dependabot
* Bump pandas from 1.3.4 to 1.3.5 (158) dependabot

Changes

* bug fixed for constrained refinement (by adding correct limit) (152) yfukai

:package: Dependencies

* Bump typeguard from 2.13.0 to 2.13.2 (149) dependabot
* Bump scipy from 1.7.1 to 1.7.3 (150) dependabot
* Bump sphinx-click from 3.0.1 to 3.0.2 (143) dependabot
* Bump poetry from 1.1.11 to 1.1.12 in /.github/workflows (139) dependabot
* Bump sphinx-click from 3.0.1 to 3.0.2 in /docs (140) dependabot
* Bump actions/setup-python from 2.2.2 to 2.3.1 (138) dependabot
* Bump nox-poetry from 0.8.6 to 0.9.0 in /.github/workflows (136) dependabot
* Bump actions/checkout from 2.3.5 to 2.4.0 (135) dependabot
* Bump actions/cache from 2.1.6 to 2.1.7 (134) dependabot
* Bump numpy from 1.21.3 to 1.21.4 (142) dependabot
* Bump pandas-stubs from 1.2.0.35 to 1.2.0.39 (144) dependabot
* Bump sphinx from 4.1.2 to 4.3.1 (145) dependabot
* Bump flake8 from 3.9.2 to 4.0.1 (131) dependabot
* Bump xdoctest from 0.15.9 to 0.15.10 (128) dependabot
* Bump coverage from 6.0b1 to 6.1.1 (123) dependabot
* Bump pandas from 1.3.3 to 1.3.4 (132) dependabot
* Bump pandas-stubs from 1.2.0.17 to 1.2.0.35 (129) dependabot
* Bump darglint from 1.8.0 to 1.8.1 (130) dependabot
* Bump virtualenv from 20.8.1 to 20.10.0 in /.github/workflows (121) dependabot
* Bump typeguard from 2.12.1 to 2.13.0 (125) dependabot
* Bump actions/checkout from 2.3.3 to 2.3.5 (119) dependabot
* Bump pip from 21.2.4 to 21.3.1 in /.github/workflows (120) dependabot
* Bump poetry from 1.1.10 to 1.1.11 in /.github/workflows (122) dependabot
* Bump numpy from 1.21.2 to 1.21.3 (124) dependabot
* Bump black from 21.9b0 to 21.10b0 (126) dependabot
* Bump click from 8.0.1 to 8.0.3 (127) dependabot
* Bump black from 21.7b0 to 21.9b0 (118) dependabot
* Bump pandas from 1.3.2 to 1.3.3 (115) dependabot
* Bump sphinx-rtd-theme from 0.5.2 to 1.0.0 in /docs (107) dependabot
* Bump networkx from 2.6.2 to 2.6.3 (116) dependabot
* Bump pre-commit from 2.14.1 to 2.15.0 (117) dependabot
* Bump sphinx from 4.1.2 to 4.2.0 in /docs (105) dependabot
* Bump poetry from 1.1.7 to 1.1.10 in /.github/workflows (104) dependabot
* Bump xdoctest from 0.15.6 to 0.15.9 (114) dependabot
* Bump virtualenv from 20.7.2 to 20.8.1 in /.github/workflows (106) dependabot
* Bump codecov/codecov-action from 2.0.3 to 2.1.0 (103) dependabot
* Bump nox from 2021.6.12 to 2021.10.1 in /.github/workflows (108) dependabot
* Bump pandas-stubs from 1.2.0.11 to 1.2.0.17 (111) dependabot
* Bump tqdm from 4.62.2 to 4.62.3 (112) dependabot
* Bump sphinx-rtd-theme from 0.5.2 to 1.0.0 (113) dependabot

Changes

* Change overlap prob uniform threshold (102) yfukai

Changes

* Change_overlap_prob_uniform_threshold (101) yfukai

:package: Dependencies

* Bump codecov/codecov-action from 2.0.2 to 2.0.3 (90) dependabot
* Bump pip from 21.2.2 to 21.2.4 in /.github/workflows (91) dependabot
* Bump virtualenv from 20.7.0 to 20.7.2 in /.github/workflows (93) dependabot
* Bump pandas-stubs from 1.2.0.1 to 1.2.0.11 (96) dependabot
* Bump pre-commit from 2.14.0 to 2.14.1 (95) dependabot
* Bump tqdm from 4.62.1 to 4.62.2 (97) dependabot
* Bump pytest from 6.2.4 to 6.2.5 (98) dependabot
* Reflect numpy update to requirements (88) yfukai

Changes

* Update numpy (87) yfukai
* updated coverage to 6.0b1 (85) yfukai
* changed west, north to left, top (77) yfukai

:package: Dependencies

* Bump sphinx from 4.1.1 to 4.1.2 in /docs (78) dependabot
* Bump virtualenv from 20.6.0 to 20.7.0 in /.github/workflows (79) dependabot
* Bump pip from 21.1.3 to 21.2.2 in /.github/workflows (80) dependabot
* Bump pandas from 1.3.0 to 1.3.1 (81) dependabot

Changes

* Writing doc (66) yfukai
* Making CI to work with type annotations (64) yfukai

:package: Dependencies

* Bump sphinx from 4.0.3 to 4.1.1 in /docs (57) dependabot
* Bump reorder-python-imports from 2.5.0 to 2.6.0 (63) dependabot
* Bump virtualenv from 20.4.7 to 20.6.0 in /.github/workflows (56) dependabot
* Bump actions/upload-artifact from 2.2.3 to 2.2.4 (39) dependabot
* Bump actions/download-artifact from 2.0.9 to 2.0.10 (38) dependabot
* Bump sphinx-click from 3.0.0 to 3.0.1 in /docs (36) dependabot
* Bump black from 21.6b0 to 21.7b0 (59) dependabot
* Bump numpy from 1.20.3 to 1.21.1 (61) dependabot
* Bump codecov/codecov-action from 1.5.2 to 2.0.2 (62) dependabot
* Bump pep8-naming from 0.11.1 to 0.12.0 (52) dependabot
* Bump networkx from 2.5.1 to 2.6.1 (51) dependabot
* Bump tqdm from 4.61.1 to 4.61.2 (50) dependabot
* Bump poetry from 1.1.6 to 1.1.7 in /.github/workflows (43) dependabot
* Bump pip from 21.1.2 to 21.1.3 in /.github/workflows (44) dependabot
* Bump mypy from 0.812 to 0.910 (42) dependabot
* Bump scipy from 1.6.3 to 1.7.0 (40) dependabot
* Bump sphinx from 4.0.2 to 4.0.3 in /docs (47) dependabot
* Bump nox-poetry from 0.8.5 to 0.8.6 in /.github/workflows (34) dependabot
* Bump tqdm from 4.61.0 to 4.61.1 (35) dependabot
* Bump nox from 2021.6.6 to 2021.6.12 in /.github/workflows (33) dependabot
* Bump black from 21.5b2 to 21.6b0 (31) dependabot
* Bump codecov/codecov-action from 1.3.2 to 1.5.2 (29) dependabot
* Bump typeguard from 2.12.0 to 2.12.1 (28) dependabot
* Bump nox from 2020.12.31 to 2021.6.6 in /.github/workflows (27) dependabot
* Bump black from 21.5b1 to 21.5b2 (26) dependabot
* Bump actions/cache from 2.1.5 to 2.1.6 (25) dependabot
* Bump sphinx from 3.5.4 to 4.0.2 (22) dependabot
* Bump virtualenv from 20.4.6 to 20.4.7 in /.github/workflows (23) dependabot
* Bump tqdm from 4.60.0 to 4.61.0 (24) dependabot
* Bump click from 7.1.2 to 8.0.1 (20) dependabot
* Bump pip from 21.1.1 to 21.1.2 in /.github/workflows (19) dependabot
* Bump virtualenv from 20.4.3 to 20.4.6 in /.github/workflows (6) dependabot
* Bump nox-poetry from 0.8.4 to 0.8.5 in /.github/workflows (5) dependabot
* Bump sphinx-click from 2.7.1 to 3.0.0 in /docs (7) dependabot
* Bump pip from 21.0.1 to 21.1.1 in /.github/workflows (2) dependabot
* Bump sphinx-click from 2.7.1 to 3.0.0 (15) dependabot
* Bump sphinx from 3.5.4 to 4.0.2 in /docs (18) dependabot
* Bump black from 20.8b1 to 21.5b1 (14) dependabot
* Bump flake8-rst-docstrings from 0.0.14 to 0.2.3 (16) dependabot