Magnipore

Bug Fix In buildModels

Fixed the following:
- bug when multiple reference sequences were provided in buildModels
- when contig switch in nanopolish file signals were aggregated to the wrong contig

Add Samtools To Dependencies

- Update README & Help Message
- Bug Fix in Nanosherlock Call of Second Sample

Add Cookiecutter Conda Recipe & Error Exit Codes

Error Codes:

- 11: Concatenating both reference files failed
- 12: Building mafft alignment failed
- 13: Running nanosherlock for the first sample failed
- 14: Running nanosherlock for the second sample failed
- 121: Guppy basecalling failed in first sample
- 122: minimap2 mapping failed in first sample
- 123: Samtools indexing failed in first sample
- 124: Nanopolish indexing failed in first sample
- 125: Nanopolish eventalign failed in first sample
- 126: Could not find provided fastq files for first sample
- 127: Could not find provided sequencing summary file for first sample
- 221: Guppy basecalling failed in second sample
- 222: minimap2 mapping failed in second sample
- 223: Samtools indexing failed in second sample
- 224: Nanopolish indexing failed in second sample
- 225: Nanopolish eventalign failed in second sample
- 226: Could not find provided fastq files for second sample
- 227: Could not find provided sequencing summary file for second sample

Improve User Output

- Reduce prints to stdout
- Change error color to red
- Print error exit code when an error occurs
- Change command color to green

Update Version Number & Readme

Major Bug Fixed:
- fixed path in the subscript "nanosherlock" is call from magnipore

Updated the README with a nice logo and more insight to the tool