Mcl.sickbay

- This version adds the human-readable label plus the token value to all enumerations over the JSON; see https://github.com/MCLConsortium/mcl.sickbay/issues/16 for more information.

- A "more official" release.

For issue https://github.com/MCLConsortium/mcl.sickbay/issues/1:

- On `ClinicalCore`:
- The `race` attribute is now a 1-to-many mapping to `CoreRace` via `core_races`
- The `type_tobacco_used` is now a 1-to-many mapping to `CoreTobacco` via `core_tobaccos`
- The attribute `days_to_birth` is now required
- On `Biospecimen`:
- The enumeration for `Precancers` has a whole bunch of new permitted values
- On `BreastOrgan`:
- The enumeration for `PrecancerousHistopathology` contains values for "unknown" and "data not available"
- The enumeration for `BreastSite` now has an `unknown` value
- A new value `pending` is available for `GeneticTestingAnswer`, `TestResults`, `EstrogenTestResults`
- The enumeration `HER2Results` adds `pending` and `unknown` values
- The enumeration `BreastImagingWorkup` adds an `unknown` value
- The enumeration `BIRADSTissues` adds values for "unknown" and "data not available"
- New `LungOrgan` plus (bogus) test data for it
- New `PancreasOrgan` plus (bogus) test data for it
- Updated `ProstateOrgan`
- Previously, this was just a placeholder to test multiple inheritance from the common `Organ` class in terms of both Python class hierachy and database hierarchy
- Now it's completely filled out with the `v0` prostate common data elements with its numerous controlled vocabularies
- Expanded enumerations: `ClinicalMStage7`, `TStage7`, `ClinicalNStage7`, `GroupStage7`, `MarginalStatus`
- New enumerations, far too many to enumerate 😏

For issue https://github.com/MCLConsortium/mcl.sickbay/issues/4:

- All fields in `LabCASMetadata` are now `String`.

For issue https://github.com/MCLConsortium/mcl.sickbay/issues/3:

- `inscribed_clinicalCore_participant_ID` is a new field on `PriorLesion`, `CoreRace`, and `CoreTobacco`
- `inscribed_biospecimen_identifier` is a new field on `AdjacentSpecimen`

For issue https://github.com/MCLConsortium/mcl.sickbay/issues/5:

- The following updates diverge from the [data dictionaries](https://mcl.nci.nih.gov/resources/standards/mcl-cdes) of the common data elements:
- `participant_ID` is now 50 characters (along with foreign keys and `inscribed` fields), up from 14
- `specimen_ID` is now 50 characters (along with foreign keys and `inscribed` fields), up from 16

And finally, for issue https://github.com/MCLConsortium/mcl.sickbay/issues/6 … we add `unknown` to all enumerations that didn't have it already.

- Rename `inscribed_participant_ID` → `inscribed_clinicalCore_participant_ID`
- Rename `inscribed_specimen_ID` → `inscribed_biospecimen_specimen_ID`

- Addresses https://github.com/MCLConsortium/mcl.sickbay/issues/2 by:
- Adding `inscribed_participant_ID` and `inscribed_specimen_ID` to `Genomics`
- Adding `inscribed_participant_ID` and `inscribed_specimen_ID` to `Imaging`
- Adding `inscribed_participant_ID` to `Biospecimen`
- (It also adds some test data to these fields.)

In this release:

- The `labcasFileURL` field is now just `labcasID`; everything else is the same except the name (and the semantics; it no longer is used to hold URLs)
- The `Organ` class now has an `inscribed_participant_ID` field you can use to note a future participant ID association with a `ClinicalCore`
- All enumerations now use [advanced enumerations](https://pypi.org/project/aenum/) for their base class.
- All enumerations now have a case-insensitive lookup.

The implications of that last bullet mean:

python
>>> from mcl.sickbay.model.enums import Race
>>> Race.black_or_african_american == Race('Black or African American')
True
>>> Race.black_or_african_american == Race['Black or African American']
True
>>> Race.black_or_african_american == Race['black or african american']
True
>>> Race('black or african american')
Traceback (most recent call last):
...
ValueError: 'black or african american' is not a valid Race


So if you want case-insensitive lookups, use brackets, not parentheses.