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Changed
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- Changed the default optimization batch size from 100k to 10k voxels per run. Due to changes in MOT, the current batch size fails for some users.
Changed
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- Removed the NODDI-DTI maps from the Tensor and KurtosisTensor post-processing. They do not seem to be widely used.
For users that do desire these maps there are two ways to go about it:
1) Reinstate the post-processing. This can be done by going to the
Tensor compartment model, and add ``noddi_dti_maps`` to the
extra_optimization_maps list. This function can be imported from:
``from mdt.lib.post_processing import noddi_dti_maps``.
2) Use the function mdt.compute_noddi_dti() to compute the maps manually
based on optimization results. Typically used as:
.. code-block:: python
results = mdt.fit_model(model, input_data, ...)
noddi_dti = mdt.compute_noddi_dti(model, input_data, results)