Merge-stardist-masks

Changes

* v0.1.5 (387) gatoniel
* Python3.12 (386) gatoniel
* Zenodo badge (355) gatoniel
* fix github constraints (344) gatoniel
* updated requests (343) gatoniel
* final reference got set (337) gatoniel
* rename paper->main in image paths (331) gatoniel
* Paper (329) gatoniel
* fix tf 2.11.0 security issues (330) gatoniel

:package: Dependencies

* Bump sphinx from 7.1.0 to 7.1.1 in /docs (357) dependabot
* Bump furo from 2023.5.20 to 2023.7.26 in /docs (356) dependabot
* Bump virtualenv from 20.24.0 to 20.24.2 in /.github/workflows (351) dependabot
* Bump pip from 23.1.2 to 23.2.1 in /.github/workflows (352) dependabot
* Bump stardist from 0.8.3 to 0.8.5 (350) dependabot
* Bump sphinx from 7.0.1 to 7.1.0 in /docs (353) dependabot
* Bump virtualenv from 20.23.1 to 20.24.0 in /.github/workflows (346) dependabot
* Bump pypa/gh-action-pypi-publish from 1.8.7 to 1.8.8 (345) dependabot
* Bump pyupgrade from 3.3.1 to 3.3.2 (314) dependabot
* Bump mypy from 1.4.0 to 1.4.1 (340) dependabot
* Bump release-drafter/release-drafter from 5.23.0 to 5.24.0 (341) dependabot
* Bump pypa/gh-action-pypi-publish from 1.8.5 to 1.8.7 (339) dependabot
* Bump nox-poetry from 1.0.2 to 1.0.3 in /.github/workflows (342) dependabot
* Bump pytest from 7.3.2 to 7.4.0 (338) dependabot
* Bump reorder-python-imports from 3.9.0 to 3.10.0 (335) dependabot
* Bump mypy from 1.2.0 to 1.4.0 (336) dependabot
* Bump pytest-mock from 3.10.0 to 3.11.1 (333) dependabot
* Bump coverage from 7.2.3 to 7.2.7 (328) dependabot
* Bump pytest from 7.3.1 to 7.3.2 (332) dependabot
* Bump sphinx from 6.2.1 to 7.0.1 in /docs (323) dependabot
* Bump furo from 2023.3.27 to 2023.5.20 in /docs (325) dependabot
* Bump edt from 2.3.0 to 2.3.1 (322) dependabot
* Bump sphinx from 6.1.3 to 6.2.1 in /docs (313) dependabot
* Bump pip from 23.0.1 to 23.1.1 in /.github/workflows (310) dependabot
* Bump pygments from 2.15.0 to 2.15.1 (308) dependabot
* Bump pytest from 7.3.0 to 7.3.1 (306) dependabot
* Bump nox from 2022.11.21 to 2023.4.22 in /.github/workflows (311) dependabot
* Bump mypy from 1.1.1 to 1.2.0 (302) dependabot
* Bump coverage from 7.2.2 to 7.2.3 (301) dependabot
* Bump pytest from 7.2.2 to 7.3.0 (303) dependabot
* Bump pygments from 2.14.0 to 2.15.0 (304) dependabot
* Bump pypa/gh-action-pypi-publish from 1.8.3 to 1.8.5 (300) dependabot
* Bump black from 22.12.0 to 23.3.0 (298) dependabot
* Bump furo from 2023.3.23 to 2023.3.27 in /docs (296) dependabot
* Bump furo from 2022.12.7 to 2023.3.23 in /docs (295) dependabot
* Bump pypa/gh-action-pypi-publish from 1.8.1 to 1.8.3 (294) dependabot
* Bump coverage from 7.2.1 to 7.2.2 (291) dependabot
* Bump pypa/gh-action-pypi-publish from 1.7.1 to 1.8.1 (290) dependabot
* Bump pypa/gh-action-pypi-publish from 1.6.5 to 1.7.1 (287) dependabot
* Bump virtualenv from 20.20.0 to 20.21.0 in /.github/workflows (288) dependabot
* Bump flake8-bugbear from 23.2.13 to 23.3.12 (289) dependabot
* Bump pypa/gh-action-pypi-publish from 1.6.4 to 1.6.5 (286) dependabot

Changes

* bump to v0.1.4 (285) gatoniel
* timeseries 2d (284) gatoniel
* Fix new mypy (283) gatoniel
* new flake8 and updated packages (276) gatoniel

:package: Dependencies

* Bump coverage from 6.5.0 to 7.2.1 (280) dependabot
* Bump release-drafter/release-drafter from 5.21.1 to 5.23.0 (273) dependabot
* Bump sphinx from 5.3.0 to 6.1.3 in /docs (261) dependabot
* Bump furo from 2022.9.29 to 2022.12.7 in /docs (249) dependabot
* Bump pypa/gh-action-pypi-publish from 1.6.1 to 1.6.4 (248) dependabot
* Bump flake8-bugbear from 22.10.27 to 23.2.13 (271) dependabot
* Bump pip from 22.3.1 to 23.0.1 in /.github/workflows (272) dependabot
* Bump virtualenv from 20.17.1 to 20.20.0 in /.github/workflows (275) dependabot
* Bump pypa/gh-action-pypi-publish from 1.5.2 to 1.6.1 (243) dependabot
* Bump virtualenv from 20.17.0 to 20.17.1 in /.github/workflows (244) dependabot
* Bump pyupgrade from 3.2.3 to 3.3.0 (242) dependabot
* Bump salsify/action-detect-and-tag-new-version from 2.0.2 to 2.0.3 (240) dependabot
* Bump pypa/gh-action-pypi-publish from 1.5.1 to 1.5.2 (241) dependabot
* Bump nox from 2022.8.7 to 2022.11.21 in /.github/workflows (231) dependabot
* Bump virtualenv from 20.16.7 to 20.17.0 in /.github/workflows (238) dependabot
* Bump pyupgrade from 3.2.2 to 3.2.3 (239) dependabot

Changes

* Subsampling before touching pixels (237) gatoniel

Changes

* version 0.1.2 (236) gatoniel
* Border pixels (234) gatoniel

:package: Dependencies

* Bump safety from 2.3.2 to 2.3.3 (235) dependabot
* Bump flake8-rst-docstrings from 0.2.7 to 0.3.0 (230) dependabot
* Bump mypy from 0.990 to 0.991 (229) dependabot
* Bump virtualenv from 20.16.6 to 20.16.7 in /.github/workflows (228) dependabot
* Bump nox-poetry from 1.0.1 to 1.0.2 in /.github/workflows (226) dependabot
* Bump pyupgrade from 3.2.0 to 3.2.2 (227) dependabot
* Bump pip from 22.3 to 22.3.1 in /.github/workflows (224) dependabot
* Bump mypy from 0.982 to 0.990 (225) dependabot

Changes

* bump version to 0.1.1 (223) gatoniel
* respect_probs also for aniso posible (222) gatoniel
* numpy versioning because of typing (203) gatoniel

:package: Dependencies

* Bump pyupgrade from 3.1.0 to 3.2.0 (220) dependabot
* Bump flake8-bugbear from 22.10.25 to 22.10.27 (219) dependabot
* Bump virtualenv from 20.16.5 to 20.16.6 in /.github/workflows (218) dependabot
* Bump reorder-python-imports from 3.8.5 to 3.9.0 (216) dependabot
* Bump pytest from 7.1.3 to 7.2.0 (217) dependabot
* Bump flake8-bugbear from 22.9.23 to 22.10.25 (215) dependabot
* Bump salsify/action-detect-and-tag-new-version from 2.0.1 to 2.0.2 (214) dependabot
* Bump crazy-max/ghaction-github-labeler from 4.0.0 to 4.1.0 (213) dependabot
* Bump release-drafter/release-drafter from 5.21.0 to 5.21.1 (210) dependabot
* Bump sphinx from 5.2.3 to 5.3.0 in /docs (211) dependabot
* Bump pip from 22.2.2 to 22.3 in /.github/workflows (212) dependabot
* Bump reorder-python-imports from 3.8.4 to 3.8.5 (209) dependabot
* Bump pyupgrade from 3.0.0 to 3.1.0 (208) dependabot
* Bump reorder-python-imports from 3.8.3 to 3.8.4 (207) dependabot
* Bump poetry from 1.2.1 to 1.2.2 in /.github/workflows (206) dependabot
* Bump black from 22.8.0 to 22.10.0 (205) dependabot
* Bump numpy from 1.21.5 to 1.21.6 (204) dependabot
* Bump pytest-mock from 3.9.0 to 3.10.0 (202) dependabot
* Bump safety from 2.2.1 to 2.3.1 (201) dependabot
* Bump safety from 2.2.0 to 2.2.1 (200) dependabot
* Bump pytest-mock from 3.8.2 to 3.9.0 (193) dependabot
* Bump coverage from 6.4.4 to 6.5.0 (195) dependabot
* Bump mypy from 0.971 to 0.982 (197) dependabot
* Bump pyupgrade from 2.38.2 to 3.0.0 (199) dependabot
* Bump sphinx from 5.2.2 to 5.2.3 in /docs (196) dependabot
* Bump furo from 2022.9.15 to 2022.9.29 in /docs (194) dependabot
* Bump flake8-bandit from 3.0.0 to 4.1.1 (191) dependabot
* Bump sphinx from 5.2.1 to 5.2.2 in /docs (190) dependabot
* Bump pyupgrade from 2.38.0 to 2.38.2 (188) dependabot
* Bump reorder-python-imports from 3.8.2 to 3.8.3 (189) dependabot
* Bump sphinx from 5.1.1 to 5.2.1 in /docs (187) dependabot
* Bump flake8 from 4.0.1 to 5.0.4 (157) dependabot
* Bump flake8-bugbear from 22.9.11 to 22.9.23 (186) dependabot
* Bump safety from 2.1.1 to 2.2.0 (185) dependabot
* Bump poetry from 1.1.15 to 1.2.1 in /.github/workflows (183) dependabot
* Bump furo from 2022.6.21 to 2022.9.15 (184) dependabot
* Bump furo from 2022.6.21 to 2022.9.15 in /docs (180) dependabot
* Bump furo from 2022.6.21 to 2022.9.15 (181) dependabot
* Bump release-drafter/release-drafter from 5.20.1 to 5.21.0 (179) dependabot
* Bump pyupgrade from 2.37.3 to 2.38.0 (182) dependabot
* Bump flake8-bugbear from 22.8.23 to 22.9.11 (178) dependabot
* Bump virtualenv from 20.16.4 to 20.16.5 in /.github/workflows (177) dependabot
* Bump xdoctest from 1.0.2 to 1.1.0 (176) dependabot
* Bump pytest from 7.1.2 to 7.1.3 (175) dependabot
* Bump black from 22.6.0 to 22.8.0 (174) dependabot

Changes

* v0.1.0 (172) gatoniel
* Overwriting (171) gatoniel
* Rayutil (170) gatoniel
* find overlaps (94) gatoniel
* refactor: typos + readbility (80) erjel

:package: Dependencies

* Bump virtualenv from 20.16.3 to 20.16.4 in /.github/workflows (169) dependabot
* Bump flake8-bugbear from 22.8.22 to 22.8.23 (168) dependabot
* Bump poetry from 1.1.14 to 1.1.15 in /.github/workflows (166) dependabot
* Bump flake8-bugbear from 22.7.1 to 22.8.22 (167) dependabot
* Bump pep8-naming from 0.13.1 to 0.13.2 (164) dependabot
* Bump xdoctest from 1.0.1 to 1.0.2 (165) dependabot
* Bump release-drafter/release-drafter from 5.20.0 to 5.20.1 (162) dependabot
* Bump coverage from 6.4.3 to 6.4.4 (163) dependabot
* Bump coverage from 6.4.2 to 6.4.3 (160) dependabot
* Bump pygments from 2.12.0 to 2.13.0 (161) dependabot
* Bump nox from 2022.1.7 to 2022.8.7 in /.github/workflows (159) dependabot
* Bump virtualenv from 20.16.2 to 20.16.3 in /.github/workflows (158) dependabot
* Bump pip from 22.2.1 to 22.2.2 in /.github/workflows (156) dependabot
* Bump pip from 22.2 to 22.2.1 in /.github/workflows (152) dependabot
* Bump virtualenv from 20.16.0 to 20.16.2 in /.github/workflows (153) dependabot
* Bump pyupgrade from 2.37.2 to 2.37.3 (154) dependabot
* Bump sphinx from 5.1.0 to 5.1.1 in /docs (151) dependabot
* Bump virtualenv from 20.15.1 to 20.16.0 in /.github/workflows (149) dependabot
* Bump pypa/gh-action-pypi-publish from 1.5.0 to 1.5.1 (148) dependabot
* Bump sphinx from 5.0.2 to 5.1.0 in /docs (150) dependabot
* Bump pip from 22.1.2 to 22.2 in /.github/workflows (147) dependabot
* Bump reorder-python-imports from 3.8.1 to 3.8.2 (144) dependabot
* Bump mypy from 0.961 to 0.971 (145) dependabot
* Bump pyupgrade from 2.37.1 to 2.37.2 (146) dependabot
* Bump safety from 2.1.0 to 2.1.1 (143) dependabot
* Bump flake8-rst-docstrings from 0.2.6 to 0.2.7 (141) dependabot
* Bump pep8-naming from 0.13.0 to 0.13.1 (142) dependabot
* Bump safety from 2.0.0 to 2.1.0 (140) dependabot
* Bump coverage from 6.4.1 to 6.4.2 (139) dependabot
* Bump xdoctest from 1.0.0 to 1.0.1 (136) dependabot
* Bump reorder-python-imports from 3.3.0 to 3.8.1 (137) dependabot
* Bump pre-commit from 2.19.0 to 2.20.0 (138) dependabot
* Bump pyupgrade from 2.34.0 to 2.37.1 (135) dependabot
* Bump poetry from 1.1.13 to 1.1.14 in /.github/workflows (134) dependabot
* Bump reorder-python-imports from 3.1.0 to 3.3.0 (133) dependabot
* Bump flake8-bugbear from 22.6.22 to 22.7.1 (132) dependabot
* Bump virtualenv from 20.15.0 to 20.15.1 in /.github/workflows (131) dependabot
* Bump black from 22.3.0 to 22.6.0 (129) dependabot
* Bump safety from 1.10.3 to 2.0.0 (130) dependabot
* Bump virtualenv from 20.14.1 to 20.15.0 in /.github/workflows (128) dependabot
* Bump furo from 2022.4.7 to 2022.6.21 (125) dependabot
* Bump flake8-bugbear from 22.4.25 to 22.6.22 (126) dependabot
* Bump nox-poetry from 1.0.0 to 1.0.1 in /.github/workflows (127) dependabot
* Bump furo from 2022.6.4.1 to 2022.6.21 in /docs (123) dependabot
* Bump furo from 2022.4.7 to 2022.6.21 (124) dependabot
* Bump sphinx from 5.0.1 to 5.0.2 in /docs (122) dependabot
* Bump actions/setup-python from 3 to 4 (121) dependabot
* Bump flake8-rst-docstrings from 0.2.5 to 0.2.6 (118) dependabot
* Bump pre-commit-hooks from 4.2.0 to 4.3.0 (120) dependabot
* Bump pyupgrade from 2.33.0 to 2.34.0 (119) dependabot
* Bump mypy from 0.960 to 0.961 (115) dependabot
* Bump pyupgrade from 2.32.1 to 2.33.0 (116) dependabot
* Bump furo from 2022.4.7 to 2022.6.4.1 in /docs (114) dependabot
* Bump stardist from 0.8.2 to 0.8.3 (112) dependabot
* Bump sphinx from 5.0.0 to 5.0.1 in /docs (108) dependabot
* Bump pep8-naming from 0.12.1 to 0.13.0 (109) dependabot
* Bump coverage from 6.4 to 6.4.1 (110) dependabot
* Bump sphinx from 4.5.0 to 5.0.0 in /docs (106) dependabot
* Bump pip from 22.1.1 to 22.1.2 in /.github/workflows (107) dependabot
* Bump mypy from 0.950 to 0.960 (104) dependabot
* Bump crazy-max/ghaction-github-labeler from 3.1.1 to 4.0.0 (105) dependabot
* Bump pip from 22.1 to 22.1.1 in /.github/workflows (102) dependabot
* Bump coverage from 6.3.3 to 6.4 (103) dependabot
* Bump nox-poetry from 0.9.0 to 1.0.0 in /.github/workflows (99) dependabot
* Bump coverage from 6.3.2 to 6.3.3 (98) dependabot
* Bump release-drafter/release-drafter from 5.19.0 to 5.20.0 (95) dependabot
* Bump pip from 22.0.4 to 22.1 in /.github/workflows (96) dependabot
* Bump pyupgrade from 2.32.0 to 2.32.1 (92) dependabot
* Bump pre-commit from 2.18.1 to 2.19.0 (93) dependabot
* Bump mypy from 0.942 to 0.950 (90) dependabot
* Bump reorder-python-imports from 3.0.1 to 3.1.0 (91) dependabot
* Bump pygments from 2.11.2 to 2.12.0 (88) dependabot
* Bump pytest from 7.1.1 to 7.1.2 (89) dependabot
* Bump flake8-bugbear from 22.3.23 to 22.4.25 (87) dependabot
* Bump virtualenv from 20.14.0 to 20.14.1 in /.github/workflows (85) dependabot
* Bump stardist from 0.8.1 to 0.8.2 (86) dependabot
* Bump pyupgrade from 2.31.1 to 2.32.0 (84) dependabot
* Bump furo from 2022.3.4 to 2022.4.7 (83) dependabot
* Bump furo from 2022.3.4 to 2022.4.7 in /docs (82) dependabot
* Bump pre-commit-hooks from 4.1.0 to 4.2.0 (78) dependabot
* Bump codecov/codecov-action from 2.1.0 to 3 (76) dependabot
* Bump pre-commit from 2.17.0 to 2.18.1 (75) dependabot
* Bump sphinx from 4.4.0 to 4.5.0 in /docs (73) dependabot
* Bump black from 22.1.0 to 22.3.0 (74) dependabot
* Bump xdoctest from 0.15.10 to 1.0.0 (72) dependabot
* Bump virtualenv from 20.13.4 to 20.14.0 in /.github/workflows (71) dependabot
* Bump mypy from 0.941 to 0.942 (70) dependabot
* Bump flake8-bugbear from 22.1.11 to 22.3.23 (68) dependabot
* Bump actions/cache from 2.1.7 to 3 (66) dependabot
* Bump stardist from 0.8.0 to 0.8.1 (69) dependabot
* Bump virtualenv from 20.13.3 to 20.13.4 in /.github/workflows (65) dependabot
* Bump pytest from 7.1.0 to 7.1.1 (64) dependabot