Meteor

New Features:

- Enhanced Meteor Interaction: Improved testing of entries ensures a more robust and reliable interaction with Meteor.
- KEGG Modules Analysis: Meteor now provides insightful analysis of KEGG modules, offering a deeper understanding of metabolic pathways.
- Optimized Strain Analysis: Our strain analysis parameters have been fine-tuned for more accurate and efficient results.
- Faster Tree Computation: The TN69 metrics are now available for tree computation, significantly reducing processing time compared to GTR.
- Catalogue Version Checking: Meteor now verifies that the catalogue version is compatible with the current Meteor version, ensuring seamless integration.

Bug Fixes:
This release also includes multiple bug fixes, improving stability and performance across different functionalities.

New Features:
- Builder: The reference is now compressed using bgzip, consistent with our catalog listings. This enhancement ensures efficient storage and compatibility across tools.
- Catalogues: We have standardized the annotation format and enhanced usage with the Feather format. Additionally, the Resfinder and ResfinderFG databases are now fully integrated and available for use.
- Mapping: Meteor now provides more detailed and informative outputs regarding the counts, offering users better insights into the mapping process.
- Strain Analysis: Our strain analysis parameters have been further optimized, and multiprocessing has been enabled for enhanced performance and faster analysis.
- Tree Computation: Multiprocessing support is now active, allowing for quicker and more efficient tree computations.

Bug Fixes:
This release also includes multiple bug fixes, improving stability and performance across different functionalities.

We have improved the stability of the strain analysis.

We have completely revised the strain analysis. Meteor is now based on freebayes.
Several dependencies have been removed: raxml and bcftools.

What's Changed
* Fix tree path list by fthirion89 in https://github.com/metagenopolis/meteor/pull/50

New Contributors
* fthirion89 made their first contribution in https://github.com/metagenopolis/meteor/pull/50

**Full Changelog**: https://github.com/metagenopolis/meteor/compare/2.0.13...2.0.14

- Fix strain analysis for some catalogues
- Enhanced Mutation Rate Analysis
- Extend testing coverage
- Solving Malfunctioning Strains with some microbial catalogs
- Activate GBM analysis
- Introducing automode for Rapid and Normal Analysis
- Tests covers 92% of the code