Handle large mtDNA deletions
Major release that includes several updates (see NEWS) including new functionality for large mtDNA deletion calling and quantification. Other updates include optional ability to filter overlapping mate reads.
tag0.5
This is a stable the version used for processing and analysis associated with Lareau*, Ludwig*, et al. Nature Biotechnology 2020.
naive
Most basic use cases associated with variant calling in Ludwig, Lareau, Ulirsch et al.