Monkeybread

Added

- Basis customization to functions using coordinates

Added

- This changelog
- Neighborhood profile function

Fixed

- Plotting function legends now better located
- `load_merscope` maintains transcript ids

Added

- Enhancements to plotting functions with better labels/legends

Fixed

- Shortest distances permutation test now includes pseudocount

Removed

- Removed unnecessary columns from `detected_transcripts.csv` when using `load_merscope`

Added

- Tutorial notebook added to documentation

Changed

- Kernel density with multiple groups are scaled individually

Fixed

- Kernel density plot bug with multiple displays
- Docstring return descriptions

Fixed

- Address issue from v0.3.2 (now yanked)

Added

- Cell contact counting function

Changed

- Default `show = True` for plotting functions for consistency with scverse ecosystem