Msproteomicstools

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- include default modification file for spectrast2tsv (bug fix)

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- added fast lowess support through statsmodels
- fix bug in wrapper around statsmodels lowess

- make threading default for the MST traversal (--mst:useRTCorrection)

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- improved reporting in YAML format for alignment tools
- port of code to Python 3
- option to use reference-based approach in MST algorithm
- improvements to documentation

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- improvements in parsing of Peakview files (preprocessor script)
- multiple improvements in TAPIR
- creation of executables for TAPIR
- metabolomics support for TAPIR

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- add tree-based alignment (MST options)
- improved output reporting
- add documentation
- improve test coverage substantially

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- add TAPIR visualization tool for chromatograms
- output data matrix in Excel format

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