Mushi

Latest version: v1.1.1

Safety actively analyzes 702335 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 2 of 2

0.2.1

A tiny 1-character patch to squash a bug in folded SFS inference from integer-valued SFS vectors

0.2.0

New feature: folded SFS
--

Thanks to work by apragsdale, demographic history can be inferred from the folded SFS using reference-polarized data instead of ancestral-state-polarized data. See the new `folded` option for [`kSFS.infer_history()`](https://harrispopgen.github.io/mushi/mushi.html#mushi.kSFS.infer_history) and [`kSFS.plot_total`](https://harrispopgen.github.io/mushi/mushi.html#mushi.kSFS.plot_total)

0.1.1

exclude docs, docsrc, etc. from package build

0.1.0

First release of the `mushi` python package, and artifacts referenced in manuscript

0.1alpha

This is a pre-release intended for the [2020 Český Krumlov Workshop on Population and Speciation Genomics].(http://evomics.org/2020-workshop-on-population-and-speciation-genomics-cesky-krumlov/)

0. If you don't have the [Conda](https://docs.conda.io/projects/conda/en/latest/user-guide/install/index.html) package manager installed, you'll need that.
1. Follow Conda environment setup in `README.md`
2. Launch the Jupyter notebook containing the activity:
bash
$ jupyter notebook cesky-krumlov-tcc-pulse-timing.ipynb

Page 2 of 2

© 2025 Safety CLI Cybersecurity Inc. All Rights Reserved.