Napari-flim-phasor-plotter

What's Changed
* compute pixel coords chunck sizes (fix bug with dask array) by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/65
* comply with napari>=0.5.0 `.colormap` attribute on Labels layer by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/65
* update documentation by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/65

**Full Changelog**: https://github.com/zoccoler/napari-flim-phasor-plotter/compare/v0.1.1...v0.1.2

What's Changed
* Documentation and installation instructions updates by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/62 and https://github.com/zoccoler/napari-flim-phasor-plotter/pull/63
* Fix getting current z and t shape from file names by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/64


**Full Changelog**: https://github.com/zoccoler/napari-flim-phasor-plotter/compare/v0.1.0...v0.1.1

What's Changed
* Adding widget to init for workflow access by sviaro in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/42
* Add example workflow by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/44
* Fix dc calculation by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/48
* Patch 0 0 7 by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/53
* Update installation instructions with mamba
* Fix `.tif` reading bug when it does not have `shaped_metadata` property
* Make summed intensity image dimensions smaller so that layer is displayed on top of raw flim data layer
* Make plugin compatible with ncp 0_8_0 by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/58
* Replace `labels_select` by `layer_select` in plotter_widget to match napari-clusters-plotter `0.8.0` changes
* Replace readPTU local function (removed `readPTU_FLIM.py`) with [ptufile](https://pypi.org/project/ptufile/) library for reading `.ptu` files (**`breaking changes`**)
* Remove Python 3.8 support to match `ptufile` library requirements (**`breaking changes`**)
* fix sample data tests to match `ptufile` library shape outputs
* Remove 3D sample_data from being shipped along with package, now it downloads [this](https://github.com/zoccoler/hazelnut_FLIM_z_stack_data/blob/main/hazelnut_FLIM_z_stack.zip) `.zip` file and decompress it to open it when requested
* Add progress bars to console when opening stacks
* Add extra function to read ptu 2d timelapse from single ptu files (`read_single_ptu_file_2d_timelapse`)
* Add lossless compression to zarr conversion
* Patch2 0 0 7 by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/59
* Change synthetic sample data layer names
* Add options to display tau lines on top of the phasor plot (**`new feature`**)
* Save pixel coordinates to table
* Handle `.sdt` files with multiple datasets (open them as different channels, unless they have different shapes, then get only the first array)
* Include metadata when converting to `.zarr` files
* Change phasor layer name and opacity
* Patch 0 1 0 by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/61
* Increase tests coverage


**Full Changelog**: https://github.com/zoccoler/napari-flim-phasor-plotter/compare/0.0.6...v0.1.0

What's Changed
* zip stack by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/40


**Full Changelog**: https://github.com/zoccoler/napari-flim-phasor-plotter/compare/0.0.5...0.0.6

What's Changed
* Add example stack by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/38
* Avoid always resetting view after clustering also in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/38
**Full Changelog**: https://github.com/zoccoler/napari-flim-phasor-plotter/compare/0.0.4...0.0.5

What's Changed
* feat: extend reader function for sdt file format by cwetzker in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/8
* check file_type string in metadata by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/9
* add laser frequency readout from sdt by cwetzker in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/10
* add summed intensity layer by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/12
* Read stacks including zarr by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/15
* Convert to zarr by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/16
* Update package name by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/25
* update documentation section usage by cwetzker in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/29
* add option in case tif files are single channel (3D) by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/28
* Add binning by sviaro in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/27
* show histogram, log scale by default, always show universal semicircle by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/31
* Add sample data by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/32
* Fix median filter by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/33
* add open phasor plotter command and update command Make FLIM Phasor P… by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/34
* Update phasor plot axes limits and selected layer by zoccoler in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/35

New Contributors
* cwetzker made their first contribution in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/8
* sviaro made their first contribution in https://github.com/zoccoler/napari-flim-phasor-plotter/pull/27

**Full Changelog**: https://github.com/zoccoler/napari-flim-phasor-plotter/compare/v0.0.1...0.0.4