Ncbimeta

Pull Requests

* [pull/12](https://github.com/ktmeaton/NCBImeta/pull/12) Contributors Guide Test

Commits

* [739cad3d](https://github.com/ktmeaton/NCBImeta/commit/739cad3d) switch release trigger to published
* [c68e5404](https://github.com/ktmeaton/NCBImeta/commit/c68e5404) run all workflows on release
* [ceb5b369](https://github.com/ktmeaton/NCBImeta/commit/ceb5b369) fix github links
* [b5681abd](https://github.com/ktmeaton/NCBImeta/commit/b5681abd) Merge pull request #12 from ktmeaton/dev
* [1d40f9a9](https://github.com/ktmeaton/NCBImeta/commit/1d40f9a9) change ver back to v0.6.6
* [6d99f145](https://github.com/ktmeaton/NCBImeta/commit/6d99f145) update links
* [1d939dec](https://github.com/ktmeaton/NCBImeta/commit/1d939dec) update pypi workflows
* [6f383e32](https://github.com/ktmeaton/NCBImeta/commit/6f383e32) update version numbers with dev suffix
* [1c30f04c](https://github.com/ktmeaton/NCBImeta/commit/1c30f04c) change version to v0.6.6dev
* [74dffef0](https://github.com/ktmeaton/NCBImeta/commit/74dffef0) remove test dir from package
* [89875fa0](https://github.com/ktmeaton/NCBImeta/commit/89875fa0) tidy up pull request template
* [ebceb166](https://github.com/ktmeaton/NCBImeta/commit/ebceb166) tidy up pull request template
* [c0cc2e2e](https://github.com/ktmeaton/NCBImeta/commit/c0cc2e2e) force linters to wait for pre-commit
* [dcf8bf8e](https://github.com/ktmeaton/NCBImeta/commit/dcf8bf8e) change flake8 py find file
* [94762f74](https://github.com/ktmeaton/NCBImeta/commit/94762f74) trial yaml lint
* [90e10878](https://github.com/ktmeaton/NCBImeta/commit/90e10878) contributors guide file update
* [6add9ae9](https://github.com/ktmeaton/NCBImeta/commit/6add9ae9) contributors guide file update
* [f11e68f4](https://github.com/ktmeaton/NCBImeta/commit/f11e68f4) install notes and project update
* [5a515e4e](https://github.com/ktmeaton/NCBImeta/commit/5a515e4e) separate install and run for flake8
* [764cbac0](https://github.com/ktmeaton/NCBImeta/commit/764cbac0) add back in flake8
* [69d8a7cd](https://github.com/ktmeaton/NCBImeta/commit/69d8a7cd) add back in python linting
* [d96c0d05](https://github.com/ktmeaton/NCBImeta/commit/d96c0d05) remove python linting
* [4ad65ae9](https://github.com/ktmeaton/NCBImeta/commit/4ad65ae9) remove python linting
* [445c69aa](https://github.com/ktmeaton/NCBImeta/commit/445c69aa) remove python linting
* [8f51169c](https://github.com/ktmeaton/NCBImeta/commit/8f51169c) just test flake8 install
* [66376349](https://github.com/ktmeaton/NCBImeta/commit/66376349) temp remove pr hook and test flake8
* [522e1243](https://github.com/ktmeaton/NCBImeta/commit/522e1243) add macos conda install test
* [56b3ec1d](https://github.com/ktmeaton/NCBImeta/commit/56b3ec1d) add macos build workflow
* [2750e066](https://github.com/ktmeaton/NCBImeta/commit/2750e066) use conda setup action
* [36b88dad](https://github.com/ktmeaton/NCBImeta/commit/36b88dad) comment out PyPI repo install for now
* [48b15d51](https://github.com/ktmeaton/NCBImeta/commit/48b15d51) remove setuptools install
* [d44db942](https://github.com/ktmeaton/NCBImeta/commit/d44db942) MAJOR bug fix for build workflow
* [86c90653](https://github.com/ktmeaton/NCBImeta/commit/86c90653) try to force build workflow with python3
* [d7c1f9f2](https://github.com/ktmeaton/NCBImeta/commit/d7c1f9f2) test lint workflow no req
* [9870d239](https://github.com/ktmeaton/NCBImeta/commit/9870d239) update markdownlint-cli to ignore paper dir
* [062928c4](https://github.com/ktmeaton/NCBImeta/commit/062928c4) lint setup
* [c684f97c](https://github.com/ktmeaton/NCBImeta/commit/c684f97c) lint bug_report
* [f7a62b57](https://github.com/ktmeaton/NCBImeta/commit/f7a62b57) new pull request template
* [9cdc4ce6](https://github.com/ktmeaton/NCBImeta/commit/9cdc4ce6) more detailed contibute guide
* [0c1fcd16](https://github.com/ktmeaton/NCBImeta/commit/0c1fcd16) more paths to lint
* [12078ef7](https://github.com/ktmeaton/NCBImeta/commit/12078ef7) lint conftest
* [4976309a](https://github.com/ktmeaton/NCBImeta/commit/4976309a) lint schema README
* [cd724f9e](https://github.com/ktmeaton/NCBImeta/commit/cd724f9e) lint config README
* [93035ff7](https://github.com/ktmeaton/NCBImeta/commit/93035ff7) update linting workflow
* [aab8b906](https://github.com/ktmeaton/NCBImeta/commit/aab8b906) lint conftest max 80
* [3c4f9a8b](https://github.com/ktmeaton/NCBImeta/commit/3c4f9a8b) lint conftest max 80
* [7d6217db](https://github.com/ktmeaton/NCBImeta/commit/7d6217db) lint test_ncbimeta max 80
* [f8952f59](https://github.com/ktmeaton/NCBImeta/commit/f8952f59) lint test_ncbimeta max 80
* [267b401d](https://github.com/ktmeaton/NCBImeta/commit/267b401d) lint test_xml max 80
* [534f3971](https://github.com/ktmeaton/NCBImeta/commit/534f3971) lint test_utilities max 80
* [5cc8065f](https://github.com/ktmeaton/NCBImeta/commit/5cc8065f) lint test_utilities max 80
* [499c75f3](https://github.com/ktmeaton/NCBImeta/commit/499c75f3) lint test_join max 80
* [1dd3536f](https://github.com/ktmeaton/NCBImeta/commit/1dd3536f) lint test_annotate max 80
* [06938061](https://github.com/ktmeaton/NCBImeta/commit/06938061) lint test_export max 80
* [c8c67cca](https://github.com/ktmeaton/NCBImeta/commit/c8c67cca) lint test_errors
* [db12ca1f](https://github.com/ktmeaton/NCBImeta/commit/db12ca1f) lint NCBImetaAnnotate max 80
* [b8030efb](https://github.com/ktmeaton/NCBImeta/commit/b8030efb) lint NCBImetaJoin max 80
* [6b78c19c](https://github.com/ktmeaton/NCBImeta/commit/6b78c19c) lint NCBImetaJoin max 80
* [49a4e918](https://github.com/ktmeaton/NCBImeta/commit/49a4e918) lint NCBImetaErrors max 80
* [8e511183](https://github.com/ktmeaton/NCBImeta/commit/8e511183) lint NCBImetaErrors max 80
* [1c909129](https://github.com/ktmeaton/NCBImeta/commit/1c909129) redo py linting max 80
* [3a912e59](https://github.com/ktmeaton/NCBImeta/commit/3a912e59) lint NCBImetaUtilities max 80
* [69abba67](https://github.com/ktmeaton/NCBImeta/commit/69abba67) lint NCBImetaUtilities max 80
* [c635f83f](https://github.com/ktmeaton/NCBImeta/commit/c635f83f) lint NCBImetaUtilities max 80
* [f0818fd5](https://github.com/ktmeaton/NCBImeta/commit/f0818fd5) lint NCBImetaUtilities max 80
* [4997e76f](https://github.com/ktmeaton/NCBImeta/commit/4997e76f) lint NCBImetaUtilities max 80
* [d2c2f6d6](https://github.com/ktmeaton/NCBImeta/commit/d2c2f6d6) lint NCBImetaExport max 80
* [6cc3f06d](https://github.com/ktmeaton/NCBImeta/commit/6cc3f06d) lint NCBImetaExport max 80
* [8f3f898d](https://github.com/ktmeaton/NCBImeta/commit/8f3f898d) update badges and requirements
* [54327273](https://github.com/ktmeaton/NCBImeta/commit/54327273) more informative names for build jobs
* [229fc561](https://github.com/ktmeaton/NCBImeta/commit/229fc561) lint CHANGELOG with line len
* [35a6482a](https://github.com/ktmeaton/NCBImeta/commit/35a6482a) update build badge to gh actions
* [64f51457](https://github.com/ktmeaton/NCBImeta/commit/64f51457) simplify workflow names
* [96259597](https://github.com/ktmeaton/NCBImeta/commit/96259597) simplify workflow names
* [8bf6dbea](https://github.com/ktmeaton/NCBImeta/commit/8bf6dbea) lint CHANGELOG
* [3158f783](https://github.com/ktmeaton/NCBImeta/commit/3158f783) add markdownlint-cli to pre-commit lint
* [863aaf23](https://github.com/ktmeaton/NCBImeta/commit/863aaf23) ncbimeta adhere to B950 max 80
* [f6e58b2f](https://github.com/ktmeaton/NCBImeta/commit/f6e58b2f) ignore B950 in conftest
* [a609a1e7](https://github.com/ktmeaton/NCBImeta/commit/a609a1e7) fix i var in loop
* [212fd6e4](https://github.com/ktmeaton/NCBImeta/commit/212fd6e4) revert to len 80
* [eb1b9f0f](https://github.com/ktmeaton/NCBImeta/commit/eb1b9f0f) revert to len 80
* [a3c2b937](https://github.com/ktmeaton/NCBImeta/commit/a3c2b937) lint ncbimeta with bugbear
* [abdb2eb5](https://github.com/ktmeaton/NCBImeta/commit/abdb2eb5) lint ncbimeta with bugbear
* [b223578b](https://github.com/ktmeaton/NCBImeta/commit/b223578b) lint ncbimeta with bugbear
* [f60b4258](https://github.com/ktmeaton/NCBImeta/commit/f60b4258) lint ncbimeta with bugbear
* [ec29ac9d](https://github.com/ktmeaton/NCBImeta/commit/ec29ac9d) lint ncbimeta with bugbear
* [0e1b5198](https://github.com/ktmeaton/NCBImeta/commit/0e1b5198) lint ncbimeta
* [a790dd61](https://github.com/ktmeaton/NCBImeta/commit/a790dd61) attempte bugbear for flake8
* [3e93d0f4](https://github.com/ktmeaton/NCBImeta/commit/3e93d0f4) more str format for black
* [37beb315](https://github.com/ktmeaton/NCBImeta/commit/37beb315) reformat str to make black happy
* [caf0312c](https://github.com/ktmeaton/NCBImeta/commit/caf0312c) lint with new rules
* [15b5e41f](https://github.com/ktmeaton/NCBImeta/commit/15b5e41f) lint with new rules
* [a7a8e327](https://github.com/ktmeaton/NCBImeta/commit/a7a8e327) lint with new rules
* [e63ddc95](https://github.com/ktmeaton/NCBImeta/commit/e63ddc95) lint with new rules
* [048855c4](https://github.com/ktmeaton/NCBImeta/commit/048855c4) lint with new rules
* [f69c9bfd](https://github.com/ktmeaton/NCBImeta/commit/f69c9bfd) lint with new rules
* [9ccea9c9](https://github.com/ktmeaton/NCBImeta/commit/9ccea9c9) fix test module import
* [55da36c0](https://github.com/ktmeaton/NCBImeta/commit/55da36c0) lint conftest
* [e41452e7](https://github.com/ktmeaton/NCBImeta/commit/e41452e7) test file specific rule exclude
* [cad97a45](https://github.com/ktmeaton/NCBImeta/commit/cad97a45) change E501 exclude to conftest
* [294bc50b](https://github.com/ktmeaton/NCBImeta/commit/294bc50b) flake8 config in setup.cfg
* [ab237975](https://github.com/ktmeaton/NCBImeta/commit/ab237975) test flake8 ignore conftest
* [4563f59a](https://github.com/ktmeaton/NCBImeta/commit/4563f59a) lint test_ncbimeta
* [9fa14aa5](https://github.com/ktmeaton/NCBImeta/commit/9fa14aa5) lint test_ncbimeta
* [b22f4915](https://github.com/ktmeaton/NCBImeta/commit/b22f4915) lint test_utilities
* [2be38960](https://github.com/ktmeaton/NCBImeta/commit/2be38960) lint test_utilities
* [082f9156](https://github.com/ktmeaton/NCBImeta/commit/082f9156) lint test_join
* [b5742fd9](https://github.com/ktmeaton/NCBImeta/commit/b5742fd9) lint test_export
* [7d4f29c1](https://github.com/ktmeaton/NCBImeta/commit/7d4f29c1) lint test_join
* [efa7c750](https://github.com/ktmeaton/NCBImeta/commit/efa7c750) lint test_export
* [93cffa9f](https://github.com/ktmeaton/NCBImeta/commit/93cffa9f) lint test_errors
* [c25df97f](https://github.com/ktmeaton/NCBImeta/commit/c25df97f) lint test_errors
* [cde103fe](https://github.com/ktmeaton/NCBImeta/commit/cde103fe) fix comment spacing
* [5d574303](https://github.com/ktmeaton/NCBImeta/commit/5d574303) fix comment spacing
* [25ee239a](https://github.com/ktmeaton/NCBImeta/commit/25ee239a) lint test_xml
* [000d9060](https://github.com/ktmeaton/NCBImeta/commit/000d9060) lint test_xml
* [810a70cc](https://github.com/ktmeaton/NCBImeta/commit/810a70cc) lint test_annotateconcatenate
* [c76738a5](https://github.com/ktmeaton/NCBImeta/commit/c76738a5) lint test_annotateconcatenate
* [04dd0992](https://github.com/ktmeaton/NCBImeta/commit/04dd0992) lint test_annotatereplace
* [ce0f9e0d](https://github.com/ktmeaton/NCBImeta/commit/ce0f9e0d) lint test_annotatereplace
* [a6acbc0a](https://github.com/ktmeaton/NCBImeta/commit/a6acbc0a) lint test_annotatereplace
* [f039442c](https://github.com/ktmeaton/NCBImeta/commit/f039442c) lint NCBImeta
* [489fc1b5](https://github.com/ktmeaton/NCBImeta/commit/489fc1b5) lint NCBImeta
* [cf980d10](https://github.com/ktmeaton/NCBImeta/commit/cf980d10) lint NCBImetaAnnotate
* [2829ebfe](https://github.com/ktmeaton/NCBImeta/commit/2829ebfe) lint NCBImetaAnnotate
* [8388eb77](https://github.com/ktmeaton/NCBImeta/commit/8388eb77) lint NCBImetaAnnotateReplace
* [4ccfc225](https://github.com/ktmeaton/NCBImeta/commit/4ccfc225) lint NCBImetaExport
* [c2aab367](https://github.com/ktmeaton/NCBImeta/commit/c2aab367) lint NCBImetaExport
* [b00abcd0](https://github.com/ktmeaton/NCBImeta/commit/b00abcd0) add lint checklist for py files
* [cc8243df](https://github.com/ktmeaton/NCBImeta/commit/cc8243df) lint NCBImetaJoin
* [7614502d](https://github.com/ktmeaton/NCBImeta/commit/7614502d) lint single quotes
* [3fe54360](https://github.com/ktmeaton/NCBImeta/commit/3fe54360) pull request template
* [6d2c1b7b](https://github.com/ktmeaton/NCBImeta/commit/6d2c1b7b) remove old dev require file
* [58b0669c](https://github.com/ktmeaton/NCBImeta/commit/58b0669c) draft contributors guide
* [6fdf6f2e](https://github.com/ktmeaton/NCBImeta/commit/6fdf6f2e) update build comments
* [348dd6df](https://github.com/ktmeaton/NCBImeta/commit/348dd6df) linting and dev depend update
* [854a4371](https://github.com/ktmeaton/NCBImeta/commit/854a4371) remove old contributor notes
* [ce36f022](https://github.com/ktmeaton/NCBImeta/commit/ce36f022) remove poetry toml
* [db9889b6](https://github.com/ktmeaton/NCBImeta/commit/db9889b6) update Lat and Lon for BioSample schema yaml
* [e3259858](https://github.com/ktmeaton/NCBImeta/commit/e3259858) notes on replacing old schema
* [ebaf5eb2](https://github.com/ktmeaton/NCBImeta/commit/ebaf5eb2) dev testing toml file
* [e83d45c9](https://github.com/ktmeaton/NCBImeta/commit/e83d45c9) formatting notes
* [4c9de0a2](https://github.com/ktmeaton/NCBImeta/commit/4c9de0a2) fix line wrap
* [ff0bb82e](https://github.com/ktmeaton/NCBImeta/commit/ff0bb82e) add python file trigger
* [cb07360a](https://github.com/ktmeaton/NCBImeta/commit/cb07360a) black and flake8 format
* [1b1454f5](https://github.com/ktmeaton/NCBImeta/commit/1b1454f5) poetry experiment
* [3f1e9117](https://github.com/ktmeaton/NCBImeta/commit/3f1e9117) force python 3.7
* [dc9da600](https://github.com/ktmeaton/NCBImeta/commit/dc9da600) rename dev requirements
* [323627ea](https://github.com/ktmeaton/NCBImeta/commit/323627ea) basic deploy workflow for pypi
* [b9d387a0](https://github.com/ktmeaton/NCBImeta/commit/b9d387a0) fix indendation
* [506d2c30](https://github.com/ktmeaton/NCBImeta/commit/506d2c30) create deploy.yaml
* [22652e0a](https://github.com/ktmeaton/NCBImeta/commit/22652e0a) line endings fix
* [b0729285](https://github.com/ktmeaton/NCBImeta/commit/b0729285) developer dependencies install guide
* [a35875fe](https://github.com/ktmeaton/NCBImeta/commit/a35875fe) fix mixed line endings
* [5b32ea92](https://github.com/ktmeaton/NCBImeta/commit/5b32ea92) pre-commit configuration
* [52e9e799](https://github.com/ktmeaton/NCBImeta/commit/52e9e799) remove trailing whitespace and file endings
* [094ff71f](https://github.com/ktmeaton/NCBImeta/commit/094ff71f) gh actions and linting
* [1cc59ead](https://github.com/ktmeaton/NCBImeta/commit/1cc59ead) fix indentation
* [5bdb96ee](https://github.com/ktmeaton/NCBImeta/commit/5bdb96ee) correct lint extension
* [0dc356f9](https://github.com/ktmeaton/NCBImeta/commit/0dc356f9) restrict paths and add more workflow
* [6a5590c6](https://github.com/ktmeaton/NCBImeta/commit/6a5590c6) remove codecov command
* [58d10a9c](https://github.com/ktmeaton/NCBImeta/commit/58d10a9c) update all names
* [e6485616](https://github.com/ktmeaton/NCBImeta/commit/e6485616) path in quotes
* [8abaea04](https://github.com/ktmeaton/NCBImeta/commit/8abaea04) linting yaml with markdown
* [d1a446a2](https://github.com/ktmeaton/NCBImeta/commit/d1a446a2) add workflow to path
* [fce336df](https://github.com/ktmeaton/NCBImeta/commit/fce336df) wildcard paths in quotes
* [e5332c86](https://github.com/ktmeaton/NCBImeta/commit/e5332c86) all branches restrict paths
* [ff2e1c62](https://github.com/ktmeaton/NCBImeta/commit/ff2e1c62) restrict paths remove example
* [76d1a77b](https://github.com/ktmeaton/NCBImeta/commit/76d1a77b) change repo name to action
* [ba746033](https://github.com/ktmeaton/NCBImeta/commit/ba746033) remove version number
* [c2d46a19](https://github.com/ktmeaton/NCBImeta/commit/c2d46a19) change repo tarball ver
* [906fc27a](https://github.com/ktmeaton/NCBImeta/commit/906fc27a) quick start example
* [e5e516c1](https://github.com/ktmeaton/NCBImeta/commit/e5e516c1) codecov upload
* [01b938f2](https://github.com/ktmeaton/NCBImeta/commit/01b938f2) fix indentation
* [c65775fb](https://github.com/ktmeaton/NCBImeta/commit/c65775fb) ensure unique names
* [e49c4b11](https://github.com/ktmeaton/NCBImeta/commit/e49c4b11) formatting and new test
* [49a80089](https://github.com/ktmeaton/NCBImeta/commit/49a80089) rename to build
* [07f4bc79](https://github.com/ktmeaton/NCBImeta/commit/07f4bc79) add main installation
* [744a0d4c](https://github.com/ktmeaton/NCBImeta/commit/744a0d4c) use the pip tutorial gh actions
* [d6c38cd1](https://github.com/ktmeaton/NCBImeta/commit/d6c38cd1) sudo for pip installs
* [b31a524c](https://github.com/ktmeaton/NCBImeta/commit/b31a524c) try sudo instead
* [3bec2315](https://github.com/ktmeaton/NCBImeta/commit/3bec2315) remember to activate
* [d37982a8](https://github.com/ktmeaton/NCBImeta/commit/d37982a8) try in conda env
* [eb7ea002](https://github.com/ktmeaton/NCBImeta/commit/eb7ea002) Try github actions
* [16799dcb](https://github.com/ktmeaton/NCBImeta/commit/16799dcb) test out github actions
* [3cc15721](https://github.com/ktmeaton/NCBImeta/commit/3cc15721) fix line ending
* [0e901059](https://github.com/ktmeaton/NCBImeta/commit/0e901059) MANIFEST for pypi packaging
* [228c3698](https://github.com/ktmeaton/NCBImeta/commit/228c3698) update v0.6.5 to v0.6.6
* [7f92720f](https://github.com/ktmeaton/NCBImeta/commit/7f92720f) minor update
* [77403356](https://github.com/ktmeaton/NCBImeta/commit/77403356) config for manifest
* [5c4479bf](https://github.com/ktmeaton/NCBImeta/commit/5c4479bf) document dev dependencies
* [42ba5eac](https://github.com/ktmeaton/NCBImeta/commit/42ba5eac) ignore fusion table
* [3c9abf3b](https://github.com/ktmeaton/NCBImeta/commit/3c9abf3b) Convert BioProjectTitle to XPath query
* [a150cd64](https://github.com/ktmeaton/NCBImeta/commit/a150cd64) SQL Update fix for char escape and security
* [bb52506a](https://github.com/ktmeaton/NCBImeta/commit/bb52506a) fix slack PR notification bool
* [e55544e3](https://github.com/ktmeaton/NCBImeta/commit/e55544e3) temp pip instructions
* [3a88be83](https://github.com/ktmeaton/NCBImeta/commit/3a88be83) pypi install note

Pull Requests

* [pull/9](https://github.com/ktmeaton/NCBImeta/pull/9) Add ability to use XPath queries from within the .yaml config

Commits

* [ccfabe3a](https://github.com/ktmeaton/NCBImeta/commit/ccfabe3a) Merge branch 'master' into dev
* [4531fdf6](https://github.com/ktmeaton/NCBImeta/commit/4531fdf6) update dates, ver, community guidelines
* [a455008c](https://github.com/ktmeaton/NCBImeta/commit/a455008c) Move XPath query explanation to README_schema doc
* [b61f931d](https://github.com/ktmeaton/NCBImeta/commit/b61f931d) update version number to v0.6.5
* [138cc5f7](https://github.com/ktmeaton/NCBImeta/commit/138cc5f7) Merge pull request #9 from hellothisisMatt/feature/add-xpath-support
* [a7415066](https://github.com/ktmeaton/NCBImeta/commit/a7415066) Update all other issues template [skip ci]
* [7d375742](https://github.com/ktmeaton/NCBImeta/commit/7d375742) Update feature request template
* [86ccf013](https://github.com/ktmeaton/NCBImeta/commit/86ccf013) Update bug report templates
* [66dfb737](https://github.com/ktmeaton/NCBImeta/commit/66dfb737) remove branch pr9 from travis testing
* [fd166157](https://github.com/ktmeaton/NCBImeta/commit/fd166157) update unittests to include new values retrieved with advanced Xpath
* [564c18fb](https://github.com/ktmeaton/NCBImeta/commit/564c18fb) test implementation and error class when Xpath query is empty and unspecified
* [9b0b11fd](https://github.com/ktmeaton/NCBImeta/commit/9b0b11fd) define an error class for when the Xpath query is empty and unspecified
* [ade807c0](https://github.com/ktmeaton/NCBImeta/commit/ade807c0) check if the Xpath query was left empty and unspecified
* [2c5e9a20](https://github.com/ktmeaton/NCBImeta/commit/2c5e9a20) add XPath queries to match the example config
* [35b7b950](https://github.com/ktmeaton/NCBImeta/commit/35b7b950) Merge pull request #1 from ktmeaton/pr9
* [659238ae](https://github.com/ktmeaton/NCBImeta/commit/659238ae) update changelog with error classes, run CI
* [c8b6584f](https://github.com/ktmeaton/NCBImeta/commit/c8b6584f) New error classes that can be raised in adv_xml_search
* [c04e981d](https://github.com/ktmeaton/NCBImeta/commit/c04e981d) revise adv_xml_search to check type of result
* [1817705c](https://github.com/ktmeaton/NCBImeta/commit/1817705c) remove outdated test xpath commands
* [a5c2fff6](https://github.com/ktmeaton/NCBImeta/commit/a5c2fff6) fix non-specific BioSampleBioProjectAccession
* [c390ff66](https://github.com/ktmeaton/NCBImeta/commit/c390ff66) refine xpath search for attr value
* [84180028](https://github.com/ktmeaton/NCBImeta/commit/84180028) Enable attribute returns and error checking
* [a9b80573](https://github.com/ktmeaton/NCBImeta/commit/a9b80573) enable dev and py9 for CI
* [ddc6a065](https://github.com/ktmeaton/NCBImeta/commit/ddc6a065) correct NucleotideBioSampleAccession xpath query
* [8f0e2ead](https://github.com/ktmeaton/NCBImeta/commit/8f0e2ead) simplified test example for tip search
* [0a5fb699](https://github.com/ktmeaton/NCBImeta/commit/0a5fb699) add contrib info
* [bffe8294](https://github.com/ktmeaton/NCBImeta/commit/bffe8294) XPATH use, remove nonspecific NucleotideAssemblyAccession
* [16451e7d](https://github.com/ktmeaton/NCBImeta/commit/16451e7d) clarify comma separated with space
* [6e972c21](https://github.com/ktmeaton/NCBImeta/commit/6e972c21) 2 tests of adv_xml_search starting from root or starting from tip
* [51584860](https://github.com/ktmeaton/NCBImeta/commit/51584860) xpath param of adv_xml_search as preformatted xml
* [c22c8596](https://github.com/ktmeaton/NCBImeta/commit/c22c8596) document the space and comma
* [65353dca](https://github.com/ktmeaton/NCBImeta/commit/65353dca) Merge upstream dev changes into pr9
* [55859648](https://github.com/ktmeaton/NCBImeta/commit/55859648) Add XPATH Information to config readme
* [56e0b3c5](https://github.com/ktmeaton/NCBImeta/commit/56e0b3c5) Add ability to use full XPath for XML searching
* [3206959a](https://github.com/ktmeaton/NCBImeta/commit/3206959a) new to do fixes
* [62ab0e7c](https://github.com/ktmeaton/NCBImeta/commit/62ab0e7c) SRABioProjectAccession edge cases
* [0cadcec0](https://github.com/ktmeaton/NCBImeta/commit/0cadcec0) SRABioSampleAccession typo
* [5232f359](https://github.com/ktmeaton/NCBImeta/commit/5232f359) update SRABioProjectAccession
* [24bdfe01](https://github.com/ktmeaton/NCBImeta/commit/24bdfe01) v0.6.5 init changes
* [cd5efb4d](https://github.com/ktmeaton/NCBImeta/commit/cd5efb4d) update BioSample schema and example for SRABioSampleAccession
* [fb579507](https://github.com/ktmeaton/NCBImeta/commit/fb579507) badge update and rearrange [skip ci]

Commits

* [33cdca3f](https://github.com/ktmeaton/NCBImeta/commit/33cdca3f) switch travis back to master only
* [03481fe5](https://github.com/ktmeaton/NCBImeta/commit/03481fe5) expand issues section [skip ci]
* [1b94dfeb](https://github.com/ktmeaton/NCBImeta/commit/1b94dfeb) upcoming features section [skip ci]
* [a55df18f](https://github.com/ktmeaton/NCBImeta/commit/a55df18f) doc update [skip ci]
* [80889436](https://github.com/ktmeaton/NCBImeta/commit/80889436) test multi match
* [7e5cabd9](https://github.com/ktmeaton/NCBImeta/commit/7e5cabd9) update nucleotide data
* [575b153c](https://github.com/ktmeaton/NCBImeta/commit/575b153c) switch travis to dev branch
* [9e56cec6](https://github.com/ktmeaton/NCBImeta/commit/9e56cec6) small progress on nucleotide data
* [a81357e4](https://github.com/ktmeaton/NCBImeta/commit/a81357e4) v0.6.4 notes
* [c7dd8faa](https://github.com/ktmeaton/NCBImeta/commit/c7dd8faa) ignore some example and test files
* [d3fa6ccd](https://github.com/ktmeaton/NCBImeta/commit/d3fa6ccd) ver update
* [a4a3d9ee](https://github.com/ktmeaton/NCBImeta/commit/a4a3d9ee) commit to encode removal
* [d3abba52](https://github.com/ktmeaton/NCBImeta/commit/d3abba52) working on nucleotide export
* [300055a7](https://github.com/ktmeaton/NCBImeta/commit/300055a7) encode decode purge
* [cdf506f8](https://github.com/ktmeaton/NCBImeta/commit/cdf506f8) uncomment encode decode calls
* [33192faf](https://github.com/ktmeaton/NCBImeta/commit/33192faf) SQL parameter and table col check
* [31f92037](https://github.com/ktmeaton/NCBImeta/commit/31f92037) Extra param checking Issue #7
* [585a200a](https://github.com/ktmeaton/NCBImeta/commit/585a200a) table and column name catching
* [5b46aaa0](https://github.com/ktmeaton/NCBImeta/commit/5b46aaa0) SQL parameter complete
* [b11f401b](https://github.com/ktmeaton/NCBImeta/commit/b11f401b) sanitize output format again
* [4eca45d9](https://github.com/ktmeaton/NCBImeta/commit/4eca45d9) sanitize output format
* [69b1f769](https://github.com/ktmeaton/NCBImeta/commit/69b1f769) test for table and column name format
* [8104b940](https://github.com/ktmeaton/NCBImeta/commit/8104b940) SQL table name add
* [73af61a4](https://github.com/ktmeaton/NCBImeta/commit/73af61a4) before more sql select change
* [e4c17c70](https://github.com/ktmeaton/NCBImeta/commit/e4c17c70) slack travis-ci integration

Commits

* [77e6fe17](https://github.com/ktmeaton/NCBImeta/commit/77e6fe17) enable master branch CI
* [8850b76b](https://github.com/ktmeaton/NCBImeta/commit/8850b76b) codecov spacing syntax error
* [523687be](https://github.com/ktmeaton/NCBImeta/commit/523687be) allow dev CI
* [16a4f56f](https://github.com/ktmeaton/NCBImeta/commit/16a4f56f) bioconda autobump bot rely
* [4446f94f](https://github.com/ktmeaton/NCBImeta/commit/4446f94f) remove bioconda scripts
* [b92681f4](https://github.com/ktmeaton/NCBImeta/commit/b92681f4) autobump script update
* [49e4bab7](https://github.com/ktmeaton/NCBImeta/commit/49e4bab7) hidden script names and autobump script [skip ci]
* [502338b1](https://github.com/ktmeaton/NCBImeta/commit/502338b1) resume full testing
* [a76ff011](https://github.com/ktmeaton/NCBImeta/commit/a76ff011) use the bioconda recommended install code [skip ci]
* [052a82c5](https://github.com/ktmeaton/NCBImeta/commit/052a82c5) solved mystery of branch bc-tbd [skip ci]
* [324b668e](https://github.com/ktmeaton/NCBImeta/commit/324b668e) automate ver number update [skip ci]
* [41ed42ed](https://github.com/ktmeaton/NCBImeta/commit/41ed42ed) switch zenodo citation to the all ver DOI [skip ci]
* [c00f4784](https://github.com/ktmeaton/NCBImeta/commit/c00f4784) remove unnecessary tag condition
* [2d5dda85](https://github.com/ktmeaton/NCBImeta/commit/2d5dda85) if statement spacing
* [f139b226](https://github.com/ktmeaton/NCBImeta/commit/f139b226) simplify commit message [skip ci]
* [d6c3c027](https://github.com/ktmeaton/NCBImeta/commit/d6c3c027) travis tag match v
* [553124d1](https://github.com/ktmeaton/NCBImeta/commit/553124d1) tag check
* [fb349cad](https://github.com/ktmeaton/NCBImeta/commit/fb349cad) file format linux
* [086851a2](https://github.com/ktmeaton/NCBImeta/commit/086851a2) executable mode
* [4053814a](https://github.com/ktmeaton/NCBImeta/commit/4053814a) move conda update commands to script
* [23292884](https://github.com/ktmeaton/NCBImeta/commit/23292884) set branch upstream origin
* [6b3d224f](https://github.com/ktmeaton/NCBImeta/commit/6b3d224f) add, commit, push recipe
* [20b58f61](https://github.com/ktmeaton/NCBImeta/commit/20b58f61) enforce semicolon
* [98609ac1](https://github.com/ktmeaton/NCBImeta/commit/98609ac1) split up branch creation and check out
* [c9ac4a55](https://github.com/ktmeaton/NCBImeta/commit/c9ac4a55) no tag enforcement yet
* [03b675ee](https://github.com/ktmeaton/NCBImeta/commit/03b675ee) forgotten symbols
* [5d742c2e](https://github.com/ktmeaton/NCBImeta/commit/5d742c2e) sed replacement check
* [d6268fe0](https://github.com/ktmeaton/NCBImeta/commit/d6268fe0) src sha256 refine
* [4c11045c](https://github.com/ktmeaton/NCBImeta/commit/4c11045c) path and url fix
* [d8fc06b9](https://github.com/ktmeaton/NCBImeta/commit/d8fc06b9) conda var first pass
* [5f6d8ca5](https://github.com/ktmeaton/NCBImeta/commit/5f6d8ca5) hide user ref [skip ci]
* [e48c1e67](https://github.com/ktmeaton/NCBImeta/commit/e48c1e67) remove dir checks
* [87266f3c](https://github.com/ktmeaton/NCBImeta/commit/87266f3c) remove comments
* [4e1606b1](https://github.com/ktmeaton/NCBImeta/commit/4e1606b1) travis-ci test post local verify
* [4554da93](https://github.com/ktmeaton/NCBImeta/commit/4554da93) fix incorrect slug usage
* [a0fa57ee](https://github.com/ktmeaton/NCBImeta/commit/a0fa57ee) show git config
* [664a2aa6](https://github.com/ktmeaton/NCBImeta/commit/664a2aa6) directory checking
* [3d711f34](https://github.com/ktmeaton/NCBImeta/commit/3d711f34) config param fix
* [a1a9fa07](https://github.com/ktmeaton/NCBImeta/commit/a1a9fa07) bioconda update attempt 2
* [dfbd7e38](https://github.com/ktmeaton/NCBImeta/commit/dfbd7e38) bioconda update attempt
* [8f0c064e](https://github.com/ktmeaton/NCBImeta/commit/8f0c064e) more pwd checks
* [95801e52](https://github.com/ktmeaton/NCBImeta/commit/95801e52) pwd test
* [b6b0856d](https://github.com/ktmeaton/NCBImeta/commit/b6b0856d) condition testing
* [cb497125](https://github.com/ktmeaton/NCBImeta/commit/cb497125) Document the bioconda repo master branch switch

Pull Requests

* [pull/5](https://github.com/ktmeaton/NCBImeta/pull/5) Adding Bioconda as an installation option

Commits

* [3f8fac57](https://github.com/ktmeaton/NCBImeta/commit/3f8fac57) PR and Issue linking
* [4c942075](https://github.com/ktmeaton/NCBImeta/commit/4c942075) branch match ver release name [skip ci]
* [d421128d](https://github.com/ktmeaton/NCBImeta/commit/d421128d) date update v0.6.2 [skip ci]
* [7dc34dd5](https://github.com/ktmeaton/NCBImeta/commit/7dc34dd5) automate pypi deploy [skip ci]
* [e636c6a0](https://github.com/ktmeaton/NCBImeta/commit/e636c6a0) CI branch on master
* [37aedb52](https://github.com/ktmeaton/NCBImeta/commit/37aedb52) Merge branch 'dev'
* [71ab0e87](https://github.com/ktmeaton/NCBImeta/commit/71ab0e87) merge dev into master
* [3de43a83](https://github.com/ktmeaton/NCBImeta/commit/3de43a83) Merge branch 'dev' of https://github.com/ktmeaton/NCBImeta into dev
* [7a2a3f3a](https://github.com/ktmeaton/NCBImeta/commit/7a2a3f3a) version update
* [a9605de3](https://github.com/ktmeaton/NCBImeta/commit/a9605de3) version update [skip ci]
* [2dc59202](https://github.com/ktmeaton/NCBImeta/commit/2dc59202) ver update to 0.6.2 [skip ci]
* [92d810d1](https://github.com/ktmeaton/NCBImeta/commit/92d810d1) Ouput dir is created instead of raising error [skip ci]
* [bd10fbd7](https://github.com/ktmeaton/NCBImeta/commit/bd10fbd7) remove slash [skip ci]
* [f8200686](https://github.com/ktmeaton/NCBImeta/commit/f8200686) bioconda installation and media as raw links [skip ci]
* [f994d973](https://github.com/ktmeaton/NCBImeta/commit/f994d973) Merge branch 'dev' of https://github.com/ktmeaton/NCBImeta into dev
* [f89ccc53](https://github.com/ktmeaton/NCBImeta/commit/f89ccc53) CI on dev
* [5be403b9](https://github.com/ktmeaton/NCBImeta/commit/5be403b9) v0.6.2 bioconda and output dir
* [619e1dba](https://github.com/ktmeaton/NCBImeta/commit/619e1dba) v0.6.2 bioconda and output dir
* [c6409285](https://github.com/ktmeaton/NCBImeta/commit/c6409285) Remove the output dir error class [skip ci]
* [a68d17ad](https://github.com/ktmeaton/NCBImeta/commit/a68d17ad) Make output dir instead of raising error
* [a99a4bf4](https://github.com/ktmeaton/NCBImeta/commit/a99a4bf4) Test if output dir is created [skip ci]
* [c0c1019d](https://github.com/ktmeaton/NCBImeta/commit/c0c1019d) Merge pull request #5 from druvus/patch-1
* [c3fc9a43](https://github.com/ktmeaton/NCBImeta/commit/c3fc9a43) Paper remove unnecessary reference ncbi website [skip ci]
* [55e8bf7d](https://github.com/ktmeaton/NCBImeta/commit/55e8bf7d) Adding Bioconda as an installation option
* [17d6ba13](https://github.com/ktmeaton/NCBImeta/commit/17d6ba13) Zenodo citation and badge [skip ci]

Commits

* [0ab131a5](https://github.com/ktmeaton/NCBImeta/commit/0ab131a5) update schema doc for new xml parsing [skip ci]
* [680ddb26](https://github.com/ktmeaton/NCBImeta/commit/680ddb26) ref and capitalization [skip ci]
* [edaa3b00](https://github.com/ktmeaton/NCBImeta/commit/edaa3b00) python 3 spacing [skip ci]
* [49132f98](https://github.com/ktmeaton/NCBImeta/commit/49132f98) re-enable master CI
* [fb3a01cf](https://github.com/ktmeaton/NCBImeta/commit/fb3a01cf) aeruginosa text db
* [7dd98044](https://github.com/ktmeaton/NCBImeta/commit/7dd98044) aeruginosa paper db
* [c50677f2](https://github.com/ktmeaton/NCBImeta/commit/c50677f2) add release names
* [a93d1a11](https://github.com/ktmeaton/NCBImeta/commit/a93d1a11) Name for upcoming v0.6.1
* [a24a82f6](https://github.com/ktmeaton/NCBImeta/commit/a24a82f6) release to development
* [32d162ba](https://github.com/ktmeaton/NCBImeta/commit/32d162ba) prematurely add v0.6.1 links
* [88d6d0c1](https://github.com/ktmeaton/NCBImeta/commit/88d6d0c1) format and typos
* [5ccd379a](https://github.com/ktmeaton/NCBImeta/commit/5ccd379a) conceptual rearrange
* [be940044](https://github.com/ktmeaton/NCBImeta/commit/be940044) Initial commit desc
* [37068fc7](https://github.com/ktmeaton/NCBImeta/commit/37068fc7) complicated compare
* [8637310f](https://github.com/ktmeaton/NCBImeta/commit/8637310f) link fix
* [900c6a55](https://github.com/ktmeaton/NCBImeta/commit/900c6a55) test commit compare
* [8efd0815](https://github.com/ktmeaton/NCBImeta/commit/8efd0815) hyperlink exp
* [3b17a514](https://github.com/ktmeaton/NCBImeta/commit/3b17a514) aeruginosa config file
* [fdc4672b](https://github.com/ktmeaton/NCBImeta/commit/fdc4672b) list format tables
* [4bbeb109](https://github.com/ktmeaton/NCBImeta/commit/4bbeb109) rename
* [f7f53111](https://github.com/ktmeaton/NCBImeta/commit/f7f53111) remove old gif
* [27d1a2de](https://github.com/ktmeaton/NCBImeta/commit/27d1a2de) biosample gif
* [e5716aa2](https://github.com/ktmeaton/NCBImeta/commit/e5716aa2) gif larger
* [79b82f1e](https://github.com/ktmeaton/NCBImeta/commit/79b82f1e) gif rename
* [867775af](https://github.com/ktmeaton/NCBImeta/commit/867775af) image swap
* [37dd9c90](https://github.com/ktmeaton/NCBImeta/commit/37dd9c90) gif full path, reformat print
* [107fa144](https://github.com/ktmeaton/NCBImeta/commit/107fa144) State CLI Application
* [69f17655](https://github.com/ktmeaton/NCBImeta/commit/69f17655) specify CLI application
* [8a72fc83](https://github.com/ktmeaton/NCBImeta/commit/8a72fc83) asciicast
* [7d0a4ccc](https://github.com/ktmeaton/NCBImeta/commit/7d0a4ccc) dependency reference to file
* [e2674d74](https://github.com/ktmeaton/NCBImeta/commit/e2674d74) JOSS file additions
* [bec9abe9](https://github.com/ktmeaton/NCBImeta/commit/bec9abe9) update record number
* [08b5e589](https://github.com/ktmeaton/NCBImeta/commit/08b5e589) uncomment xml print
* [084f2006](https://github.com/ktmeaton/NCBImeta/commit/084f2006) jpg rename
* [d1bd7ae9](https://github.com/ktmeaton/NCBImeta/commit/d1bd7ae9) doc xml printing, disable master ci
* [bd92205b](https://github.com/ktmeaton/NCBImeta/commit/bd92205b) doc update API optional [skip ci]
* [2c72df89](https://github.com/ktmeaton/NCBImeta/commit/2c72df89) doc update node parse [skip ci]
* [c7a77e46](https://github.com/ktmeaton/NCBImeta/commit/c7a77e46) new prettyprint func [skip ci]
* [c78b8c25](https://github.com/ktmeaton/NCBImeta/commit/c78b8c25) update version [skip ci]
* [ec6ebf8f](https://github.com/ktmeaton/NCBImeta/commit/ec6ebf8f) edit description [skip ci]
* [daa228b4](https://github.com/ktmeaton/NCBImeta/commit/daa228b4) JOSS Paper
* [82b7b4f3](https://github.com/ktmeaton/NCBImeta/commit/82b7b4f3) Reformat headings [skip ci]
* [7cbabc9a](https://github.com/ktmeaton/NCBImeta/commit/7cbabc9a) config file name update [skip ci]
* [9808a6bd](https://github.com/ktmeaton/NCBImeta/commit/9808a6bd) Clarify and formatting [skip ci]