Nef-pipelines

Latest version: v0.1.105

Safety actively analyzes 724651 Python packages for vulnerabilities to keep your Python projects secure.

Scan your dependencies

Page 4 of 14

0.1.87

- align now supports triming to the chain extents in a reference molecular frame
- peak list indices now start from 1 not 0
- bug fix in nmrstar sequence importer [entitys without sequences no longer crash the importer]

0.1.86

- align is now more robust: it matches to the longest matching element not the first!

0.1.85

- align wasn't aligning sub-sequences correctly
- improvements to the shiftx2 readers chain handling

0.1.84

- remove bad debug code which was killing pipelines from align

0.1.83

- shiftx2 reader can read all formats output by shiftx2
- chains can now be renumber using pipes in python
- shiftx2 can now calculate shifts using an alphafold structure looked up from a pdb code
- added chains align command which can align the sequence of one frame to another frame by offsetting its sequence codes

0.1.82

- better handling of residue names that don't match the read sequence
- fixed a bug in python 3.8 where annotations were stopping the nmrstar plugin loading
- added a github actions test to check that the main entry point runs and all plugins are loaded

Page 4 of 14

© 2025 Safety CLI Cybersecurity Inc. All Rights Reserved.