wBedToFasta.py: By default, the program will guess the file format instead of using 'bed' as default. wSamToWig.py: Allow SAM/BAM format input. Sorting is not necessary. wBamToWig.py: Replaced by wSamToWig.py
1.1.12
BigWigFile can fetch items using generator. This avoids huge memory consumption when fetching the whole chromosome.
1.1.11
GeneBed.fetchDB() returns a DNA instead of string object if fetch from Fasta file. To be consisitent with Bed.fetchDB() Fix bugs in Pipeline.ChIP_Project.
1.1.10
test if issubclass before adding objects with Bed3 or its derived classes.