Nobrainer

🚀 Enhancement

- update actions [230](https://github.com/neuronets/nobrainer/pull/230) ([satra](https://github.com/satra))
- [pre-commit.ci] pre-commit autoupdate [229](https://github.com/neuronets/nobrainer/pull/229) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))

🐛 Bug Fix

- Enh/api [228](https://github.com/neuronets/nobrainer/pull/228) ([satra](https://github.com/satra) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [pre-commit.ci] pre-commit autoupdate [227](https://github.com/neuronets/nobrainer/pull/227) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- Create unet_lstm.py [207](https://github.com/neuronets/nobrainer/pull/207) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra) [Hoda1394](https://github.com/Hoda1394))
- [pre-commit.ci] pre-commit autoupdate [226](https://github.com/neuronets/nobrainer/pull/226) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [pre-commit.ci] pre-commit autoupdate [225](https://github.com/neuronets/nobrainer/pull/225) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [pre-commit.ci] pre-commit autoupdate [224](https://github.com/neuronets/nobrainer/pull/224) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [pre-commit.ci] pre-commit autoupdate [223](https://github.com/neuronets/nobrainer/pull/223) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [WIP] Updating and simplifying the end-user API of Nobrainer [215](https://github.com/neuronets/nobrainer/pull/215) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [Hoda1394](https://github.com/Hoda1394) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))
- [pre-commit.ci] pre-commit autoupdate [220](https://github.com/neuronets/nobrainer/pull/220) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [pre-commit.ci] pre-commit autoupdate [218](https://github.com/neuronets/nobrainer/pull/218) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- Hard-Coded Scaling is removed for ProgressiveGANs, GanTrainer and ProgressiveAE Training and Model files [209](https://github.com/neuronets/nobrainer/pull/209) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))
- generation api [216](https://github.com/neuronets/nobrainer/pull/216) ([Hoda1394](https://github.com/Hoda1394) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [WIP] segmentation api [213](https://github.com/neuronets/nobrainer/pull/213) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [Hoda1394](https://github.com/Hoda1394) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- file name corrected for bayesian_meshnet.py [211](https://github.com/neuronets/nobrainer/pull/211) ([Hoda1394](https://github.com/Hoda1394) [satra](https://github.com/satra))
- [pre-commit.ci] pre-commit autoupdate [212](https://github.com/neuronets/nobrainer/pull/212) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))
- Adding vox2vox model [205](https://github.com/neuronets/nobrainer/pull/205) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [Hoda1394](https://github.com/Hoda1394))
- added tensorflow-addons as install dependency [206](https://github.com/neuronets/nobrainer/pull/206) ([Hoda1394](https://github.com/Hoda1394))
- Composable Data Augmentations [189](https://github.com/neuronets/nobrainer/pull/189) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))

⚠️ Pushed to `master`

- update dockerfiles ([satra](https://github.com/satra))

Authors: 4

- [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot])
- Aakanksha Rana ([Aakanksha-Rana](https://github.com/Aakanksha-Rana))
- Hoda Rajaei ([Hoda1394](https://github.com/Hoda1394))
- Satrajit Ghosh ([satra](https://github.com/satra))

---

🚀 Enhancement

- Update README.md [203](https://github.com/neuronets/nobrainer/pull/203) ([satra](https://github.com/satra))

🐛 Bug Fix

- Progressive auto encoder [196](https://github.com/neuronets/nobrainer/pull/196) (alice.bizeulinf.ethz.ch [satra](https://github.com/satra) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [pre-commit.ci] pre-commit autoupdate [197](https://github.com/neuronets/nobrainer/pull/197) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))

⚠️ Pushed to `master`

- Update README.md ([satra](https://github.com/satra))

Authors: 3

- [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot])
- Alice Elsa Marie Bizeul (alice.bizeulinf.ethz.ch)
- Satrajit Ghosh ([satra](https://github.com/satra))

---

🐛 Bug Fix

- fix: update docker files and citation pointer [194](https://github.com/neuronets/nobrainer/pull/194) ([satra](https://github.com/satra) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))

Authors: 2

- [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot])
- Satrajit Ghosh ([satra](https://github.com/satra))

---

🚀 Enhancement

- Update README.md and move transforms [187](https://github.com/neuronets/nobrainer/pull/187) ([Hoda1394](https://github.com/Hoda1394) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))

🐛 Bug Fix

- Documentation update [184](https://github.com/neuronets/nobrainer/pull/184) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))
- Correction of G_dice and multi_class dice_calculation [164](https://github.com/neuronets/nobrainer/pull/164) ([kaczmarj](https://github.com/kaczmarj) [Aakanksha-Rana](https://github.com/Aakanksha-Rana) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))
- DOC: Update link to CITATION file [190](https://github.com/neuronets/nobrainer/pull/190) ([arokem](https://github.com/arokem))
- Bayesian: 3D bayes_by_backprop_layer + Distributed Weight Consolidation [185](https://github.com/neuronets/nobrainer/pull/185) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))
- [pre-commit.ci] pre-commit autoupdate [188](https://github.com/neuronets/nobrainer/pull/188) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- Fix tf & tfp compatibility with python version [186](https://github.com/neuronets/nobrainer/pull/186) ([Hoda1394](https://github.com/Hoda1394) [satra](https://github.com/satra))
- [pre-commit.ci] pre-commit autoupdate [183](https://github.com/neuronets/nobrainer/pull/183) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- Added Clipping constraint and KLD loss with CD [180](https://github.com/neuronets/nobrainer/pull/180) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))
- ENH: Allow multichannel input [177](https://github.com/neuronets/nobrainer/pull/177) ([richford](https://github.com/richford) [satra](https://github.com/satra))
- Add citation [181](https://github.com/neuronets/nobrainer/pull/181) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))
- [pre-commit.ci] pre-commit autoupdate [182](https://github.com/neuronets/nobrainer/pull/182) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- adding brain siamese network models and test cases [172](https://github.com/neuronets/nobrainer/pull/172) ([dhritimandas](https://github.com/dhritimandas) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))
- Added dcgan architecture with tests [66](https://github.com/neuronets/nobrainer/pull/66) ([wazeerzulfikar](https://github.com/wazeerzulfikar) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))
- BF: Add block_length param to dataset.interleave [175](https://github.com/neuronets/nobrainer/pull/175) ([richford](https://github.com/richford) [satra](https://github.com/satra))
- Weightnorm feature for Variational layer [166](https://github.com/neuronets/nobrainer/pull/166) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))
- [pre-commit.ci] pre-commit autoupdate [179](https://github.com/neuronets/nobrainer/pull/179) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [pre-commit.ci] pre-commit autoupdate [178](https://github.com/neuronets/nobrainer/pull/178) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [pre-commit.ci] pre-commit autoupdate [173](https://github.com/neuronets/nobrainer/pull/173) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [pre-commit.ci] pre-commit autoupdate [170](https://github.com/neuronets/nobrainer/pull/170) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [pre-commit.ci] pre-commit autoupdate [165](https://github.com/neuronets/nobrainer/pull/165) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [pre-commit.ci] pre-commit autoupdate [163](https://github.com/neuronets/nobrainer/pull/163) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- fix: readme to remove qualified install [162](https://github.com/neuronets/nobrainer/pull/162) ([satra](https://github.com/satra) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- fix: remove unnecessary step in release action [158](https://github.com/neuronets/nobrainer/pull/158) ([satra](https://github.com/satra))

⚠️ Pushed to `master`

- Update .zenodo.json ([satra](https://github.com/satra))

Authors: 9

- [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot])
- Aakanksha Rana ([Aakanksha-Rana](https://github.com/Aakanksha-Rana))
- Adam Richie-Halford ([richford](https://github.com/richford))
- Ariel Rokem ([arokem](https://github.com/arokem))
- Dhritiman Das ([dhritimandas](https://github.com/dhritimandas))
- Hoda Rajaei ([Hoda1394](https://github.com/Hoda1394))
- Jakub Kaczmarzyk ([kaczmarj](https://github.com/kaczmarj))
- Satrajit Ghosh ([satra](https://github.com/satra))
- Wazeer Zulfikar ([wazeerzulfikar](https://github.com/wazeerzulfikar))

---

🐛 Bug Fix

- fix: replace key retrieval and normalizers [157](https://github.com/neuronets/nobrainer/pull/157) ([satra](https://github.com/satra))
- fix: separate auto release and publish to pypi [156](https://github.com/neuronets/nobrainer/pull/156) ([satra](https://github.com/satra))
- [pre-commit.ci] pre-commit autoupdate [154](https://github.com/neuronets/nobrainer/pull/154) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))

⚠️ Pushed to `master`

- fix: add twine upload to release ([satra](https://github.com/satra))

Authors: 2

- [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot])
- Satrajit Ghosh ([satra](https://github.com/satra))

---

🚀 Enhancement

- fix: change nobrainer models repo, readme, and guide notebooks [150](https://github.com/neuronets/nobrainer/pull/150) ([satra](https://github.com/satra) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- Enh/docker [148](https://github.com/neuronets/nobrainer/pull/148) ([satra](https://github.com/satra))
- fix: Update release.yml to handle branch protection [147](https://github.com/neuronets/nobrainer/pull/147) ([satra](https://github.com/satra))

🐛 Bug Fix

- add zenodo file [153](https://github.com/neuronets/nobrainer/pull/153) ([satra](https://github.com/satra) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- enh: change standardize in dataset creation to a callable [152](https://github.com/neuronets/nobrainer/pull/152) ([satra](https://github.com/satra))
- ENH: Bayesian neural network architectures with training requisites [126](https://github.com/neuronets/nobrainer/pull/126) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [satra](https://github.com/satra) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- fix: standardize not imported for dataset creation [151](https://github.com/neuronets/nobrainer/pull/151) ([satra](https://github.com/satra))
- add estimator prediction function for kwyk model [149](https://github.com/neuronets/nobrainer/pull/149) ([Hoda1394](https://github.com/Hoda1394) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]) [satra](https://github.com/satra))
- Fix for the generate cli pytest and generation guide notebook [146](https://github.com/neuronets/nobrainer/pull/146) ([wazeerzulfikar](https://github.com/wazeerzulfikar))
- Created using Colaboratory [144](https://github.com/neuronets/nobrainer/pull/144) ([satra](https://github.com/satra) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- [pre-commit.ci] pre-commit autoupdate [142](https://github.com/neuronets/nobrainer/pull/142) ([pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- FIX: keeping compatibility with official tensorflow docker images [141](https://github.com/neuronets/nobrainer/pull/141) ([satra](https://github.com/satra))
- Add bayesian prediction [128](https://github.com/neuronets/nobrainer/pull/128) ([Hoda1394](https://github.com/Hoda1394) [satra](https://github.com/satra) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- ENH: Transform composition [113](https://github.com/neuronets/nobrainer/pull/113) ([Aakanksha-Rana](https://github.com/Aakanksha-Rana) [satra](https://github.com/satra) [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot]))
- fixes https://github.com/neuronets/nobrainer/issues/124 [#125](https://github.com/neuronets/nobrainer/pull/125) ([shashankbansal6](https://github.com/shashankbansal6) [satra](https://github.com/satra))
- fix: update dockerfiles to tensorflow 2.5.0 [140](https://github.com/neuronets/nobrainer/pull/140) ([satra](https://github.com/satra))
- ENH: Add progressive gan to nobrainer [138](https://github.com/neuronets/nobrainer/pull/138) ([wazeerzulfikar](https://github.com/wazeerzulfikar) [satra](https://github.com/satra) [djarecka](https://github.com/djarecka))
- add: release mechanism [139](https://github.com/neuronets/nobrainer/pull/139) ([satra](https://github.com/satra))
- Add progressiveGAN for 3D brain MR images [114](https://github.com/neuronets/nobrainer/pull/114) ([wazeerzulfikar](https://github.com/wazeerzulfikar))
- Enh/notebooks [137](https://github.com/neuronets/nobrainer/pull/137) ([satra](https://github.com/satra))
- add CI workflow badge [133](https://github.com/neuronets/nobrainer/pull/133) ([kaczmarj](https://github.com/kaczmarj))
- move CI to github actions [131](https://github.com/neuronets/nobrainer/pull/131) ([Hoda1394](https://github.com/Hoda1394))
- Enh/minor updates [123](https://github.com/neuronets/nobrainer/pull/123) ([kaczmarj](https://github.com/kaczmarj))
- export `LC_ALL` and `LANG` + use tensorflow 2.3.1 [118](https://github.com/neuronets/nobrainer/pull/118) ([kaczmarj](https://github.com/kaczmarj))
- use specific version of cloudpickle to fix import error [108](https://github.com/neuronets/nobrainer/pull/108) ([kaczmarj](https://github.com/kaczmarj))
- force reinstall of python dependencies in travis ci [102](https://github.com/neuronets/nobrainer/pull/102) ([kaczmarj](https://github.com/kaczmarj))

⚠️ Pushed to `master`

- fix: use token for auto with repo access ([satra](https://github.com/satra))
- Created using Colaboratory ([satra](https://github.com/satra))
- Update release.yml ([satra](https://github.com/satra))

Authors: 8

- [Hoda1394](https://github.com/Hoda1394)
- [pre-commit-ci[bot]](https://github.com/pre-commit-ci[bot])
- Aakanksha Rana ([Aakanksha-Rana](https://github.com/Aakanksha-Rana))
- Dorota Jarecka ([djarecka](https://github.com/djarecka))
- Jakub Kaczmarzyk ([kaczmarj](https://github.com/kaczmarj))
- Satrajit Ghosh ([satra](https://github.com/satra))
- Shashank Bansal ([shashankbansal6](https://github.com/shashankbansal6))
- Wazeer Zulfikar ([wazeerzulfikar](https://github.com/wazeerzulfikar))