Novartis-pisces

- Fixes a bug in the previous release (23)

- Adds support for writing gene-level effective lengths matrix (22)

- Write out salmon effective length matrices (6)
- Fix a bug in handling negative strand transcripts during transcriptomics indexing (15)
- Remove filtering logic for low count genes before DGE (13)
- Support for new intricacies in pip wheel building process (11)
- Add ERCC spike-in sequences to the default index builds (8)

This contains a hot fix for fastqp file type detection.

This is a minor bug fix release that includes:
- proper semantic version numbers from git tags
- proper handling of gzip compressed fastq files for read-level QC
- allows salmon `--libtype A` to over-ride the PISCES library type detection

This is a small update that fixes an issue bootstrapping renv and installing the R dependencies using the `pisces dependencies` command.