Nuad

Commits
- f0b5264: added Napoleon Sphinx extension for processing Google-style docstrings (David Doty) [198](https://github.com/UC-Davis-molecular-computing/nuad/pull/198)
- 8b3fbf6: added field `SearchParameters.target_score` (David Doty) [198](https://github.com/UC-Davis-molecular-computing/nuad/pull/198)
- 91a9ba7: partly addressed 191 for RNAduplex strand pairs; still need to add for other `StrandPairsConstriant`'s (David Doty) [198](https://github.com/UC-Davis-molecular-computing/nuad/pull/198)
- f7cbd04: fixed None access bug (David Doty) [198](https://github.com/UC-Davis-molecular-computing/nuad/pull/198)
- d550388: Update many_strands_no_common_domains.py (David Doty) [198](https://github.com/UC-Davis-molecular-computing/nuad/pull/198)
- 16a81c7: fixed subscripting bug where ForbiddenSubstringConstraint.substrings is specified as a set (David Doty) [200](https://github.com/UC-Davis-molecular-computing/nuad/pull/200)
- ab38ee7: closes 191: pre-packaged strand pair constraints should allow threshold to depend on number of complementary domains (David Doty) [198](https://github.com/UC-Davis-molecular-computing/nuad/pull/198)
- 6a965fd: Merge branch 'dev' into 191-pre-packaged-strand-pair-constraints-should-allow-threshold-to-depend-on-number-of-complementary-domains (David Doty) [198](https://github.com/UC-Davis-molecular-computing/nuad/pull/198)
- d2bc378: added typing_extensions to requirements.txt (David Doty) [198](https://github.com/UC-Davis-molecular-computing/nuad/pull/198)
- c579189: fixed Protocol import to try typing first, then typing_extensions if an ImportError (David Doty) [198](https://github.com/UC-Davis-molecular-computing/nuad/pull/198)
- e22fddd: Update constraints.py (David Doty) [198](https://github.com/UC-Davis-molecular-computing/nuad/pull/198)
- d183406: Merge branch 'dev' into 197-store-domainpoolpossible_sequences-as-a-single-longer-sequence-and-substring-length (David Doty) [199](https://github.com/UC-Davis-molecular-computing/nuad/pull/199)
- 1ff68d1: formatting (David Doty) [199](https://github.com/UC-Davis-molecular-computing/nuad/pull/199)
- 128d161: closes 197: introduce SubstringSampler class to store DomainPool.possible_sequences as a single longer sequence and substring length (David Doty) [199](https://github.com/UC-Davis-molecular-computing/nuad/pull/199)
- 92fd2a6: fixed bug with storing modifications for strands that crashed on using restart search option (David Doty) [199](https://github.com/UC-Davis-molecular-computing/nuad/pull/199)
- 90ad762: added `except_overlapping_indices` parameter to `SubstringSampler` constructor (David Doty) [199](https://github.com/UC-Davis-molecular-computing/nuad/pull/199)
- 8c3e38f: Update constraints.py (David Doty) [199](https://github.com/UC-Davis-molecular-computing/nuad/pull/199)
- 99f5ff9: bumped version (David Doty) [200](https://github.com/UC-Davis-molecular-computing/nuad/pull/200)

Commits
- d61702a: Update README.md (David Doty) [194](https://github.com/UC-Davis-molecular-computing/nuad/pull/194)
- c01b683: change dsd to nuad in a few places (David Doty) [194](https://github.com/UC-Davis-molecular-computing/nuad/pull/194)
- 611fa61: sleep for half a second before clearing directory to prevent file errors (David Doty) [194](https://github.com/UC-Davis-molecular-computing/nuad/pull/194)
- 04d4a6a: change `nupack_strand_pair_constraint` to `nupack_strand_pairs_constraint` to be consistent with other naming conventions (David Doty) [194](https://github.com/UC-Davis-molecular-computing/nuad/pull/194)
- 5e844a3: fixes 192: parallel constraints will fail on single-cpu systems (David Doty) [193](https://github.com/UC-Davis-molecular-computing/nuad/pull/193)
- 3576e9f: rename packages to use n (nuad) instead of d (dsd) (David Doty) [193](https://github.com/UC-Davis-molecular-computing/nuad/pull/193)
- fa50f5d: bumped version (David Doty) [194](https://github.com/UC-Davis-molecular-computing/nuad/pull/194)

Commits
- 19f8acc: fixes 182: `info_log_file=True` should create output directory before opening log file (David Doty) [187](https://github.com/UC-Davis-molecular-computing/nuad/pull/187)
- 1cb834d: bumped version and fixed version in doc/conf.py to use single source of truth (nuad/__version__.py) for version number (David Doty) [187](https://github.com/UC-Davis-molecular-computing/nuad/pull/187)
- 13e7ce7: Merge branch 'dev' into 182-info_log_file-true-tries-to-open-log-file-before-creating-output-directory (David Doty) [187](https://github.com/UC-Davis-molecular-computing/nuad/pull/187)

Commits
- a44a571: fixes 181: rna_duplex_multiple causes KeyError with parallel=True (David Doty) [184](https://github.com/UC-Davis-molecular-computing/nuad/pull/184)
- 5305210: fixes 183: restart runs with different random seeds (David Doty) [185](https://github.com/UC-Davis-molecular-computing/nuad/pull/185)
- cf4b363: bumped version (David Doty) [186](https://github.com/UC-Davis-molecular-computing/nuad/pull/186)

Commits
- 48e1951: dsd --> nuad in index.rst (David Doty) [180](https://github.com/UC-Davis-molecular-computing/nuad/pull/180)
- 2137a37: bumped version (David Doty) [180](https://github.com/UC-Davis-molecular-computing/nuad/pull/180)

Commits
- d869c94: Update .readthedocs.yaml (David Doty) [178](https://github.com/UC-Davis-molecular-computing/nuad/pull/178)
- 2590a32: bumped version (David Doty) [178](https://github.com/UC-Davis-molecular-computing/nuad/pull/178)