Oakvar

Latest version: v2.12.7

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2.5.5

- Added favicon.
- Fixed `ov run` logging with a module without `version` field.
- Improved `ov store account login` experience.

2.5.4

- Fixed the output of `ov store account create`.

2.5.3

- `ov module info` shows the module's location.
- `ov report` with `--cols` option lets you extract the desired columns only for reports.
- `stdoutreporter` is provided as a default module.
- Documentation is available at https://docs.oakvar.com.

2.5.2

* Works with Roakvar v2.5.2.

2.5.1

* OakVar store has been launched.
* Added `ov run —vcf2vcf` option for VCF input-to-VCF output files workflow, which produces annotated VCF output files orders of magnitude faster than without it. For sample-heavy input such as 1000 Genomes files, this option is critical. With this release, only VCF output files are generated without SQLite result files. However, future development is planned for keeping this speed up and generating result database files.
* Added convenient setup command `ov system setup`. After installing OakVar, `ov system setup` will take care of all setup work.
* Added command-line interface commands for the OakVar store, including:
* `ov store account create`: creates a store account
* `ov store account delete`: deletes a store account
* `ov store account change`: change a store account’s password
* `ov store account check`: checks if you are logged in at the OakVar store
* `ov store account login`: logs in to the OakVar store
* `ov store account logout`: logs out from the OakVar store
* `ov store account reset`: resets a store account’s password
* `ov store fetch`: fetches the cache of the OakVar store
* `ov module pack`: generates a zip file for the code and the data of a module, respectively
* `ov store register`: registers a module at the OakVar store
* `ov store oc`: commands to interface with OpenCRAVAT store
* Major refactoring of the entire codebase
* Other minor bug fixes and improvements

2.4.8

* Sped up ``ov gui`` and CLI commands.
* Added ``ov config oakvar`` CLI command.
* Added ``ov manifest fetch`` CLI command to update the store data cache. Store data is locally cached.
* Added ov store pack CLI command (no use for now).
* Fixed debug traceback for ``ov gui``.
* Fixed Python3.8-compatibility.
* Fixed ``--quiet`` option for CLI commands.

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