Obonet

Drops Python 3.7 support for `requires-python = ">=3.8"`.

Commits

- ffd8310 get version without deprecation warnings
- ff97d7d mypy [no-any-return] error
- cc2e7b2 pre-commit autoupdate & typing fixes
- c242afa python 3.12 as CI upper version
- 918750a pyproject ruff structure
- ac4d9be pypa/gh-action-pypi-publish kebab options

Commits

- 67ab109 readme: update CI badge
- 71bfa56 pre-commit: fix pycqa/flake8 URL
- 62eaba0 pre-commit: switch to ruff
- 0169e93 remove setup.cfg, use only pyproject.toml
- 508e5fd gitignore .ruff_cache
- e6ff647 test_read_brenda_subset: add unicode characters
- afaa34a readme: updates
- 470e2ef read_obo: default utf-8 encoding
- e5194e1 some type annotations
- fec6a82 typing: strict mypy & py.typed

Overview

- Handle case where no header is found by cthoyt in https://github.com/dhimmel/obonet/pull/26
- Increase minimum python version to 3.7
- Full Changelog: https://github.com/dhimmel/obonet/compare/v0.3.0...v0.3.1

Commits:

- 3492843 minor readme / gitignore fixes
- e22bf7b README: compare obonet to nxontology
- b53128c pre-commit autoupdate
- 6a06395 python_requires >=3.7, test 3.11
- 5dfe135 attempt to fix CI builds
- a393917 remove python version from readme
- 61b6cd8 Handle missing header (26)
- dc8f084 README: remove another python version hardcoding

Commits

0ce7c81 notebook example for replacing obsolete terms
c93e0fc Address duplicate name/ontology key error
90d7fab tests: update missing name behavior
2d1ea87 packaging: setup.cfg, pyproject.toml, setuptools_scm
4e4585c pre-commit checks
bca4a71 readme: developing docs
d616ac3 CI: github actions build
a53b4e9 CI: github actions release
c5c614c CI: remove travis
39a1cee update readme badges
04f81e1 ci: don't fail fast
f48bc0d rename default branch to main
ece5a93 readme: commands to generate release notes

Commits

58da37b Switch license to BSD-2-Clause-Patent
fb3e05e ci: fix travis build config validation messages
db8dd77 travis: colorize pytest output
d9ea75d upgrade travis builds
5cfc983 examples/go-obonet.ipynb: use graph.nodes syntax
482d767 style: blacken code
0cf3b4a read_obo ignore_obsolete option (15)
cf5e4fb Travis: use API token for PyPI authorization