Oktoberfest

Changes

🚀 Features

* Feature/xl (291) mostafakalhor


**Full Changelog**: https://github.com/wilhelm-lab/oktoberfest/compare/0.8.2...0.8.3

Changes

🐛 Bug Fixes

* Patch/fix documentation (285) WassimG


**Full Changelog**: https://github.com/wilhelm-lab/oktoberfest/compare/0.8.1...0.8.2

Changes

🚀 Features

* Feature/cit pipeline tutorial (282) WassimG


**Full Changelog**: https://github.com/wilhelm-lab/oktoberfest/compare/0.8.0...0.8.1

Changes

* removed dlomix temporarily till stable release (281) picciama
* Add cit pipeline to the release (276) WassimG
* added koinapy and extend superclass (257) picciama
* Added example code for all api functions (248) arne-vdb

🚀 Features

* Feature: DLomix integration (250) JSchlensok
* added support for MSAmanda (162) picciama
* Integration of picked-group-FDR in Oktoberfest (180) ayla-s
* use custom columns as input features for percolator (249) arne-vdb
* Feature/custom modifications (242) FaBasso
* Feature/add new iontypes (251) pfeifferpi
* Features/ptm pipeline (268) WassimG


🐛 Bug Fixes

* Fix dlomix url to be allowed by pypi (278) WassimG
* Patch/ptm model support (256) LLautenbacher


**Full Changelog**: https://github.com/wilhelm-lab/oktoberfest/compare/0.7.0...0.8.0

Changes

* updated config/prediction docs and added news (226) picciama
* Update multimodel_support (213) arne-vdb

🚀 Features

* Feature/peptide list for speclib (243) picciama
* Feature/digest nr oxidations arg (217) victorgiurcoiu
* chore/use_anndata (203) arne-vdb
* Feature/api multi rawfile support (212) picciama

:package: Dependencies

* [DEPENDABOT]: Bump tritonclient from 2.44.0 to 2.47.0 (237) dependabot
* [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.9.0 (235) dependabot
* [DEPENDABOT]: Bump codecov/codecov-action from 4.4.1 to 4.5.0 (234) dependabot
* [DEPENDABOT]: Bump xdoctest from 1.1.3 to 1.1.5 (232) dependabot
* [DEPENDABOT]: Bump peaceiris/actions-gh-pages from 3 to 4 (223) dependabot
* [DEPENDABOT]: Bump codecov/codecov-action from 4.3.1 to 4.4.1 (222) dependabot
* [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.11 to 1.8.14 (221) dependabot
* [DEPENDABOT]: Bump mokapot from 0.9.1 to 0.10.0 (139) dependabot
* [DEPENDABOT]: Bump coverage from 7.5.0 to 7.5.1 (215) dependabot
* [DEPENDABOT]: Bump seaborn from 0.12.2 to 0.13.2 (194) dependabot
* [DEPENDABOT]: Bump codecov/codecov-action from 4.3.0 to 4.3.1 (214) dependabot
* [DEPENDABOT]: Bump actions/download-artifact from 3 to 4 (210) dependabot
* [DEPENDABOT]: Bump actions/upload-artifact from 3 to 4 (168) dependabot
* [DEPENDABOT]: Bump actions/cache from 3.3.2 to 4.0.2 (209) dependabot
* [DEPENDABOT]: Bump tritonclient from 2.36.0 to 2.44.0 (208) dependabot
* [DEPENDABOT]: Bump release-drafter/release-drafter from 5 to 6 (206) dependabot
* [DEPENDABOT]: Bump codecov/codecov-action from 3.1.4 to 4.3.0 (207) dependabot
* [DEPENDABOT]: Bump actions/setup-python from 4 to 5 (165) dependabot
* [DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.10 to 1.8.11 (160) dependabot

**Full Changelog**: https://github.com/wilhelm-lab/oktoberfest/compare/0.6.2...0.7.0

Changes

* InPPO Lite 2024 workshop notebook (202) arminsl

🐛 Bug Fixes

* Fix/mokapot csv read (204) picciama