Omnipath

Latest version: v1.0.8

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2.99.11

+ Improved downloader backends

2.99.8

+ OBO parser
+ Gene Ontology access, functions to work with ontology trees
+ Database manager

2.99.7

+ New interactions query parameter: loops
+ Fixed many caching bugs

2.99.6

+ All downloaders attempt 3 times
+ New resources: Human Phenotype Ontology and Gene Ontology annotations

OmnipathR v2.99.0 (2021-03-08)

+ Many new resources besides OmniPath:
BioPlex, ConsensusPathDB, EVEX, Guide to Pharmacology (IUPHAR/BPS),
Harmonizome, HTRIdb, InWeb InBioMap, Pathway Commons,
Ramilowski et al. 2015, RegNetwork, ReMap, TF census,
TRRUST and Vinayagam et al. 2011
+ Methods for converting network elements to Bio Model
Analyzer (BMA) motifs
+ NicheNet workflow
+ Some igraph related methods: finding all paths up to
certain length; extracting the giant component of a graph
+ Caching
+ Logging
+ Configuration handling

OmnipathR v1.99.0 (2020-10-03)

+ New tests
+ Many little bugfixes
+ Updated package metadata

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