Orforise

Latest version: v1.4.2

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1.4.2

- Added Test_Data with some example data - Will continue to add more
- Fixed crashes for genes which wrap around the genome - Thanks Matt-Schmitz https://github.com/NickJD/ORForise/issues/9
- Removed some unhelpful printouts for verbose mode

**Full Changelog**: https://github.com/NickJD/ORForise/compare/v1.4.1...v1.4.2

1.4.1

This minor release is a bugfix that stops predicted ORFs from being counted as matched if they are double or more the length of their 'matched' gene.

Thanks to deprekate for the issue raised for this bug (https://github.com/NickJD/ORForise/issues/15#issue-1636600206).

1.4.0

First thank you to Matt Schmitz (https://github.com/Matt-Schmitz) for identifying a major inefficiency in the overlap checking and providing a detailed fix (See - https://github.com/NickJD/ORForise/issues/11#issue-16045008540). This has provided a significant speedup for comparing annotations (Annotation-Compare and Aggregate-Compare).

GFF_Adder is currently undergoing a major rewrite and should be used with that in mind. The user options and general utility of the tool will change significantly over the next few months.
There was a bug in GFF_Adder which would sometimes mean that overlapping annotations would not be filtered out correctly.
GFF_Adder now has additional functionality which will be documented in the near future.

1.2.2

1.2.1

ORForise sub-packages can now be called directly as 'Annotation-Compare' instead of 'python3 -m ORForise.Annotation_Compare'.

1.1.2

Fixed issue where out of order reference GFF file caused crashes.
Reference CDSs are now ordered for their start and stop positions before comparisons are made.

This release is the same as [ORForise-1.1.2](https://pypi.org/project/ORForise/1.1.2/)

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