Paper-qa

What's Changed

* Fixing `tests/tests/cassettes` issue by using absolute path by jamesbraza in https://github.com/Future-House/paper-qa/pull/482
* Retrying on known Crossref flaky SSL error in `doi_to_bibtex` by jamesbraza in https://github.com/Future-House/paper-qa/pull/479
* Cleaning up and testing `get_directory_index` by jamesbraza in https://github.com/Future-House/paper-qa/pull/483
* Modernizing Renovate config by jamesbraza in https://github.com/Future-House/paper-qa/pull/487
* Allowing `parse_text` to be given a `str` path by jamesbraza in https://github.com/Future-House/paper-qa/pull/491
* Refactor to expose `agents.RichHandler` by jamesbraza in https://github.com/Future-House/paper-qa/pull/489

**Full Changelog**: https://github.com/Future-House/paper-qa/compare/v5.0.8...v5.0.9

What's Changed

* Documenting and cleaning up manifest file logic by jamesbraza in https://github.com/Future-House/paper-qa/pull/448
* Latest dependencies for `pylint` 3.3 by jamesbraza in https://github.com/Future-House/paper-qa/pull/463
* Down-pinning `openai` 1.47 since it breaks CI by jamesbraza in https://github.com/Future-House/paper-qa/pull/466
* Lock file maintenance by renovate in https://github.com/Future-House/paper-qa/pull/462
* chore: add .gitattributes for cassettes file by devstein in https://github.com/Future-House/paper-qa/pull/468
* Documenting Python 3.11+ in README by jamesbraza in https://github.com/Future-House/paper-qa/pull/467
* Fixing flaky `test_tool_failure` by jamesbraza in https://github.com/Future-House/paper-qa/pull/465
* Documenting manifest CSV pathing a bit more by jamesbraza in https://github.com/Future-House/paper-qa/pull/469
* Handling S2 `KeyError` crash during indexing by jamesbraza in https://github.com/Future-House/paper-qa/pull/472
* Fixing `pymupdf.mupdf.FzErrorFormat` crash by recasting as an `ImpossibleParsingError` by jamesbraza in https://github.com/Future-House/paper-qa/pull/474
* Updating `test_tool_failure` cassette by jamesbraza in https://github.com/Future-House/paper-qa/pull/476
* Simplifying the indexing of `action` tokens by jamesbraza in https://github.com/Future-House/paper-qa/pull/477
* Truncating failing `test_evaluation` via `max_rollout_steps` by jamesbraza in https://github.com/Future-House/paper-qa/pull/475

New Contributors

* devstein made their first contribution in https://github.com/Future-House/paper-qa/pull/468

**Full Changelog**: https://github.com/Future-House/paper-qa/compare/v5.0.7...v5.0.8

What's Changed

* Fixing flaky test `test_pdf_reader_match_doc_details` by jamesbraza in https://github.com/Future-House/paper-qa/pull/447
* Retrying Crossref's `aiohttp.ClientConnectorError` by jamesbraza in https://github.com/Future-House/paper-qa/pull/444
* Handling `AttributeError` on structured citation prompt failure by jamesbraza in https://github.com/Future-House/paper-qa/pull/445

**Full Changelog**: https://github.com/Future-House/paper-qa/compare/v5.0.6...v5.0.7

What's Changed
* Avoiding div0 crash in `LitQATaskDataset.compute_trajectory_metrics` by jamesbraza in https://github.com/Future-House/paper-qa/pull/439
* Added some documentation and adjusted field names for ease of use in DocDetails by whitead in https://github.com/Future-House/paper-qa/pull/440


**Full Changelog**: https://github.com/Future-House/paper-qa/compare/v5.0.5...v5.0.6

What's Changed

* `build_index` with defaults by jamesbraza in https://github.com/Future-House/paper-qa/pull/430
* Less common `CROSSREF_XYZ` warnings by jamesbraza in https://github.com/Future-House/paper-qa/pull/431
* DRY'd up default `indexes` default location by jamesbraza in https://github.com/Future-House/paper-qa/pull/432
* Including paper and evidence counts in metrics by jamesbraza in https://github.com/Future-House/paper-qa/pull/435
* Allowing case insensitive `"fake"` agent type by jamesbraza in https://github.com/Future-House/paper-qa/pull/437
* Many documentation improvements by jamesbraza in https://github.com/Future-House/paper-qa/pull/438

**Full Changelog**: https://github.com/Future-House/paper-qa/compare/v5.0.4...v5.0.5

What's Changed

* `DocMetadataClient` can now take instantiated providers and processors by geemi725 in https://github.com/Future-House/paper-qa/pull/414
* Promoting agent factories to `Settings` by jamesbraza in https://github.com/Future-House/paper-qa/pull/407
* Add stub_data_dir fixture to retraction test by geemi725 in https://github.com/Future-House/paper-qa/pull/420
* `pytest-recording` docs in `CONTRIBUTING.md` by jamesbraza in https://github.com/Future-House/paper-qa/pull/410
* Fixing `test_crossref_journalquality_fields_filtering` incorrect cassette set up by jamesbraza in https://github.com/Future-House/paper-qa/pull/423
* Broken title search ut by nadolskit in https://github.com/Future-House/paper-qa/pull/411
* Update pre-commit-ci/lite-action action to v1.0.3 by renovate in https://github.com/Future-House/paper-qa/pull/422
* Pinning min `pymupdf` version by jamesbraza in https://github.com/Future-House/paper-qa/pull/424
* Preventing `Environment`s from sharing one `Docs` by jamesbraza in https://github.com/Future-House/paper-qa/pull/425
* Dropped `PyCryptodome` and `build` dependencies by jamesbraza in https://github.com/Future-House/paper-qa/pull/426

New Contributors
* nadolskit made their first contribution in https://github.com/Future-House/paper-qa/pull/411

**Full Changelog**: https://github.com/Future-House/paper-qa/compare/v5.0.3...v5.0.4