Partseg

Bug Fixes

- Fix bugs in the generation process of the changelog for release. (428)
- Restoring ROI on home button click in compare viewer (443)
- Fix Measurement name prefix in bundled PartSeg. (458)
- Napari widgets registration in pyinstaller bundle (465)
- Hide points button if no points are loaded, hide Mask checkbox if no mask is set (463)
- Replace Label data instead of adding/removing layers - fix blending layers (464)

Features

- Add threshold information in layer annotation in the Multiple Otsu ROI extraction method (430)
- Add option to select rendering method for ROI (431)
- Add callback mechanism to ProfileDict, live update of ROI render parameters (432)
- Move the info bar on the bottom of the viewer (442)
- Add options to load recent files in multiple files widget (444)
- Add ROI annotations as properties to napari labels layer created by ROI Extraction widgets (445)
- Add signals to ProfileDict, remove redundant synchronization mechanisms (449)
- Allow ignoring updates for 21 days (453)
- Save all components if no components selected in mask segmentation (456)
- Add modal dialog for search ROI components (459)
- Add full measurement support as napari widget (460)
- Add search labels as napari widget (467)

Refactor

- Export common code for load/save dialog to one place (437)
- Change most of call QFileDialog to more generic code (440)

Testing

- Add test for `PartSeg.common_backend` module (433)

Bug Fixes

- Importing the previous version of settings (406)
- Cutting without masking data (407)
- Save in subdirectory in batch plan (414)
- Loading plugins for batch processing (423)

Features

- Add randomization option for correlation calculation (421)
- Add Imagej TIFF writter for image. (405)
- Mask create widget for napari (395)
- In napari roi extraction method show information from roi extraction method (408)
- Add `*[0-9].tif` button in batch processing window (412)
- Better label representation in 3d view (418)

Refactor

- Use Font Awesome instead of custom symbols (424)

Bug Fixes

- Adding mask in Prepare Plan for batch (383)
- Set proper completion mode in SearchComboBox (384)
- Showing warnings on the error with ROI load (385)

Features

- Add CellFromNucleusFlow "Cell from nucleus flow" cell segmentation method (367)
- When cutting components in PartSeg ROI mask allow not masking outer data (379)
- Theme selection in GUI (381)
- Allow return points from ROI extraction algorithm (382)
- Add measurement to get ROI annotation by name. (386)
- PartSeg ROI extraction algorithms as napari plugins (387)
- Add Pearson, Mander's, Intensity, Spearman colocalization measurements (392)
- Separate standalone napari settings from PartSeg embedded napari settings (397)

Performance

- Use faster calc bound function (375)

Refactor

- Remove CustomApplication (389)

- change tiff save backend to ome-tiff
- add `DistanceROIROI` and `ROINeighbourhoodROI` measurements

- annotation show bugfix

- napari deprecation fixes
- speedup simple measurement
- bundle plugins initial support