Pathling

<!-- Release notes generated using configuration in .github/release.yml at v7.2.0 -->

What's Changed
New features
* Implement Python and R bulk client APIs by johngrimes in https://github.com/aehrc/pathling/pull/2162
Dependency updates
* Upgrade Spark from 3.5.0 to 3.5.5
* Upgrade HAPI from 7.0.2 to 7.6.1
* Upgrade Delta Lake from 3.2.0 to 3.3.0
* Upgrade Spring Boot from 3.2.0 to 3.3.5
* And many more...

This release ships our new bulk client capability in the Java, Scala, Python and R APIs. This automates the task of retrieving a bulk extract from a FHIR server and querying it using Pathling.

Check out the documentation here: https://pathling.csiro.au/docs/libraries/fhirpath-query#fhir-bulk-data-api


**Full Changelog**: https://github.com/aehrc/pathling/compare/v7.1.0...v7.2.0

<!-- Release notes generated using configuration in .github/release.yml at v7.1.0 -->

What's Changed
New features
* Add Parquet and Delta import by jkiddo and johngrimes in https://github.com/aehrc/pathling/pull/2062


**Full Changelog**: https://github.com/aehrc/pathling/compare/v7.0.1...v7.1.0

<!-- Release notes generated using configuration in .github/release.yml at v7.0.1 -->

What's Changed
Bug fixes
* Fix issue with CORS not working when authentication is disabled by johngrimes in https://github.com/aehrc/pathling/pull/1927


**Full Changelog**: https://github.com/aehrc/pathling/compare/v7.0.0...v7.0.1

<!-- Release notes generated using configuration in .github/release.yml at v7.0.0 -->

What's Changed
New features
* Full encoding and decoding support for References by piotrszul in https://github.com/aehrc/pathling/pull/1786 (also see #1784 from chgl)
* Save mode (append, error, overwrite or ignore) can now be set when saving a data source to Parquet and NDJSON formats through the library API
Bug fixes
* Fixed a bug where year-only dates passed to the `until` function would always return an empty result
Dependency updates
* Upgraded from Java 11 to 17
* Upgraded to Spark 3.5.1
* Upgraded to Delta Lake 3.2.0
* Upgraded to HAPI 7.0.2
* Upgraded to Spring Boot 3.2.0
Changes to defaults
* `databricks.delta.schema.autoMerge.enabled` is now set to `false` by default in the server (see 1785 from chgl)

**Important note**: Because this release contains schema changes, you may need to re-import your data.

If you override JVM options (or `JAVA_TOOL_OPTIONS` in the case of the Docker image), you may need to add `--add-exports=java.base/sun.nio.ch=ALL-UNNAMED --add-opens=java.base/java.net=ALL-UNNAMED`. This is a new requirement due to tighter controls over class access in Java 17.

**Full Changelog**: https://github.com/aehrc/pathling/compare/v6.4.2...v7.0.0

<!-- Release notes generated using configuration in .github/release.yml at v6.4.2 -->
What's Changed
Bug fixes

- 1774 Fixed: pathling_install_spark() does not work by johngrimes

**Full Changelog**: https://github.com/aehrc/pathling/compare/v6.4.1...v6.4.2

Changes to the R library relating to CRAN submission.

Pathling is now available via CRAN! 👉 https://cran.r-project.org/package=pathling