Patientmatcher

Changed
- Unfreeze PyMongo dependency
- Use MongoDB version 7 in docker-compose.yml
- Execute tests using MongoDB 7

Added
- Option to display the description of the connected nodes on the index page
Fixed
- `Build and publish to Docker Hub stage` README page badge
- Parsing of `phenotype.hpoa` file
Changed
- Updated resource files

Changed
- Abort server startup if phenotypes terms are not correctly parse from resource files
Fixed
- Parsing and downloading of the HPO definitions in the new format (`phenotype.hpoa`)
- Replaced deprecated version of Ubuntu in GitHub actions

Changed
- Refactor to avoid code smells reported by SonarCloud
Fixed
- Broken link to HPO definitions (`phenotype_annotation.tab`)
- Security hotspots flagged by SonarCloud
- Decreased vulnerability by removing some server log messages
- Problems flagged as bugs by SonarCloud
- Server startup debug message showing correct number of parsed diseases

Added
- Documentation on how to update phenotype resource files
Changed
- Download automatically phenotype resources when a non-demo app starts

Added
- GitHub action to auto-deploy documentation when a new release is created
Fixed
- Ports used to serve the app in docker-compose howto
Changed
- Removed support for asynchronous requests to the server
- Moved documentation to mkdocs pages (https://clinical-genomics.github.io/patientMatcher)