Phydms

Latest version: v2.4.1

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2.2.2

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* Fixed bug in ``spielmanwr``

2.2.1

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* Fixed typo in `phydms_comprehensive` output file

* Fixed normalization bug in `Phi_x` calculation, might slightly change numerical values for YNGKP models. This bug fix will generally slightly increase the log likelihoods for YNGKP models.

2.2.0

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* Changed computation of ``--omegabysite`` *Q*-values to compute them separately for omega > and < 1. This fixes the issue of many sites of negative selection leading to overly sensitive identification of positive selection.

* Added `utils.modelComparisonDataFrame` function

2.1.4

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* Added ``spielmanwr`` calculation to ``ExpCM`` model

* Fixed minor bug with overlays in `weblogo.LogoPlot`

2.1.3

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* Added `scalebar` option to `weblogo.LogoPlot`.

2.1.2

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* Fixed ``--colormap`` option to ``phydms_logoplot``.

* Added `underlay` and wildtype overlay bar options to `weblogo.LogoPlot`.

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