🐛 Bug Fix
- Clean attributes in subfiles [15](https://github.com/smoia/phys2cvr/pull/15) ([smoia](https://github.com/smoia))
⚠️ Pushed to `master`
- Add workflows and templates ([smoia](https://github.com/smoia))
- Parser options all there. ([smoia](https://github.com/smoia))
- lag_step becomes 0.3 ([smoia](https://github.com/smoia))
- Rename lag variables ([smoia](https://github.com/smoia))
- Rename maxlag for coherence ([smoia](https://github.com/smoia))
- Force run_regression to be true if lagged_regression is! ([smoia](https://github.com/smoia))
- Remove unused parameter ([smoia](https://github.com/smoia))
- Start working that parser ([smoia](https://github.com/smoia))
- Fix relative lag background ([smoia](https://github.com/smoia))
- Minor text correction and transform comments into issues ([smoia](https://github.com/smoia))
- Signal percentage change the data outside of regression ([smoia](https://github.com/smoia))
- When co2 signal is not provided, force skip convolution ([smoia](https://github.com/smoia))
- Add relative lag export ([smoia](https://github.com/smoia))
- Reduce butter order to 1 ([smoia](https://github.com/smoia))
- Improve empty array creation, change lag variable names, change take command due to heavy memory load ([smoia](https://github.com/smoia))
- Fix f string ([smoia](https://github.com/smoia))
- Remove breakpoints ([smoia](https://github.com/smoia))
- Fix beta and tstat assignment ([smoia](https://github.com/smoia))
- Invert regr shift call and fix assignment of volumes after regression ([smoia](https://github.com/smoia))
- Close those plot ([smoia](https://github.com/smoia))
- Skip hrf plot ([smoia](https://github.com/smoia))
- Better try than have the doubt ([smoia](https://github.com/smoia))
- Fine shifts exist only if they exist ([smoia](https://github.com/smoia))
- Fix lagged regressor matrices shape ([smoia](https://github.com/smoia))
- Fix step ([smoia](https://github.com/smoia))
- Move output to right folder ([smoia](https://github.com/smoia))
- stats should be debugged. ([smoia](https://github.com/smoia))
- Correct regressors hstack ([smoia](https://github.com/smoia))
- Also say the right matrix! ([smoia](https://github.com/smoia))
- read denoising matrix, not its name ([smoia](https://github.com/smoia))
- Invert petco2hrf shifts matrix orientation ([smoia](https://github.com/smoia))
- Remember to add a plot of the xcorr with both xcorrs if two were used ([smoia](https://github.com/smoia))
- Shorter tp assignment ([smoia](https://github.com/smoia))
- join comes from paths... ([smoia](https://github.com/smoia))
- Fix func import ([smoia](https://github.com/smoia))
- Fix mask import and average of functional signal ([smoia](https://github.com/smoia))
- Boolean input variables as booleans rather than empty ([smoia](https://github.com/smoia))
- Fix general pre-installation stuff ([smoia](https://github.com/smoia))
- Fix authors ([smoia](https://github.com/smoia))
- DEBUG ([smoia](https://github.com/smoia))
- Add multiple denoise matrices ([smoia](https://github.com/smoia))
- If user specifies lag map, use it! ([smoia](https://github.com/smoia))
- stats.regression returns all lagged regressors in memory ([smoia](https://github.com/smoia))
- Update comments ([smoia](https://github.com/smoia))
- If no outdir is specified, make one in the functional input folder ([smoia](https://github.com/smoia))
- Log to log folder (skip code folder) ([smoia](https://github.com/smoia))
- Simplify input ([smoia](https://github.com/smoia))
- Update inputs accordingly ([smoia](https://github.com/smoia))
- Check dimension of confounders input ([smoia](https://github.com/smoia))
- Add R square computation ([smoia](https://github.com/smoia))
- Add possibility to skip convolution (e.g. if input is already petco2hrf) ([smoia](https://github.com/smoia))
- Add legendre and OLS regression ([smoia](https://github.com/smoia))
- Move everything related to statistical models to stats module ([smoia](https://github.com/smoia))
- Move signal related functions to signal module ([smoia](https://github.com/smoia))
- Move io function to their own module ([smoia](https://github.com/smoia))
- Remove extra main ([smoia](https://github.com/smoia))
- Remove nilearn and fix imports ([smoia](https://github.com/smoia))
- Start adding lagged regression - but it's totally untested. ([smoia](https://github.com/smoia))
- Update necessary libraries and import OLSModel ([smoia](https://github.com/smoia))
- Read phys files from peakdet! ([smoia](https://github.com/smoia))
- Remove save call from main workflow ([smoia](https://github.com/smoia))
- Less variables, more understanding ([smoia](https://github.com/smoia))
- Add support for gzipped tsv ([smoia](https://github.com/smoia))
- Load phys files ([smoia](https://github.com/smoia))
- Fix check extension ([smoia](https://github.com/smoia))
- Continue file import, add TR reading, Add filter application ([smoia](https://github.com/smoia))
- Start working on get_regressor ([smoia](https://github.com/smoia))
- Add a filter signal function ([smoia](https://github.com/smoia))
- Save bash call as a function not in main workflow ([smoia](https://github.com/smoia))
- Change scipy import ([smoia](https://github.com/smoia))
- Change author ([smoia](https://github.com/smoia))
- Add most of file import ([smoia](https://github.com/smoia))
- Clear up package ([smoia](https://github.com/smoia))
- Update contributors ([smoia](https://github.com/smoia))
- Add physiopy logo ([smoia](https://github.com/smoia))
- Add parser and main workflow ([smoia](https://github.com/smoia))
- Correct development status ([smoia](https://github.com/smoia))
- Add infra files ([smoia](https://github.com/smoia))
- Initial commit ([smoia](https://github.com/smoia))
📝 Documentation
- Add docstrings [14](https://github.com/smoia/phys2cvr/pull/14) ([smoia](https://github.com/smoia))
Authors: 1
- Stefano Moia ([smoia](https://github.com/smoia))