Pipefunc

📝 Other

- Integrate `MapSpec`ed `Pipeline`s with Adaptive ([56](https://github.com/pipefunc/pipefunc/pull/56))
- Add functionality to run `Pipeline`s with `MapSpec`s ([55](https://github.com/pipefunc/pipefunc/pull/55))
- Refactor, improve, test, and integrate `MapSpec` into `Pipeline` ([22](https://github.com/pipefunc/pipefunc/pull/22))
- Add `MapSpec` and `FileBasedObjectArray` `from aiida-dynamic-workflows` ([54](https://github.com/pipefunc/pipefunc/pull/54))
- Improve utils, add topological_generations, and better error message ([53](https://github.com/pipefunc/pipefunc/pull/53))
- Fix docs (jupyterlite) ([52](https://github.com/pipefunc/pipefunc/pull/52))
- Take out arg_combination functions ([51](https://github.com/pipefunc/pipefunc/pull/51))
- Take out methods and make functions and simplify code ([50](https://github.com/pipefunc/pipefunc/pull/50))
- dump, load, Pipeline.defaults, Pipeline.copy, and style ([49](https://github.com/pipefunc/pipefunc/pull/49))
- `construct_dag` fix and remove dead code ([47](https://github.com/pipefunc/pipefunc/pull/47))
- Refactor `Pipeline._execute_pipeline` ([44](https://github.com/pipefunc/pipefunc/pull/44))
- Switch around log message ([45](https://github.com/pipefunc/pipefunc/pull/45))
- Add test `test_full_output_cache` ([46](https://github.com/pipefunc/pipefunc/pull/46))
- Fix test_handle_error on MacOS ([43](https://github.com/pipefunc/pipefunc/pull/43))
- Better error message ([42](https://github.com/pipefunc/pipefunc/pull/42))
- Raise when unused parameters are provided ([41](https://github.com/pipefunc/pipefunc/pull/41))
- Add pipeline.drop ([40](https://github.com/pipefunc/pipefunc/pull/40))
- Rename PipelineFunction -> PipeFunc ([39](https://github.com/pipefunc/pipefunc/pull/39))
- Several caching fixes ([38](https://github.com/pipefunc/pipefunc/pull/38))
- Use codecov/codecov-actionv4 ([36](https://github.com/pipefunc/pipefunc/pull/36))

🔄 Pre-commit

- [pre-commit.ci] pre-commit autoupdate ([48](https://github.com/pipefunc/pipefunc/pull/48))
- [pre-commit.ci] pre-commit autoupdate ([37](https://github.com/pipefunc/pipefunc/pull/37))

📊 Stats

- `.yml`: +9 lines, -4 lines
- `.yaml`: +1 lines, -1 lines
- `.md`: +1 lines, -1 lines
- `.ipynb`: +5 lines, -5 lines
- `.py`: +3265 lines, -522 lines
- `.toml`: +4 lines, -2 lines
- `other`: +21 lines, -0 lines

📝 Other

- Make positional only ([35](https://github.com/pipefunc/pipefunc/pull/35))
- Format line ([6c80ed4](https://github.com/pipefunc/pipefunc/commit/6c80ed4))
- Remove unused var T ([8e57f06](https://github.com/pipefunc/pipefunc/commit/8e57f06))
- Reorganize some definitions into modules ([34](https://github.com/pipefunc/pipefunc/pull/34))
- Add a TaskGraph ([33](https://github.com/pipefunc/pipefunc/pull/33))
- Fix cache argument in docs and fix pickling issues ([32](https://github.com/pipefunc/pipefunc/pull/32))
- Add 3.12 to testing matrix ([31](https://github.com/pipefunc/pipefunc/pull/31))
- Optimizations ([30](https://github.com/pipefunc/pipefunc/pull/30))
- Rename cloudpickle parameter ([29](https://github.com/pipefunc/pipefunc/pull/29))
- Allow lazy pipeline evaluation ([26](https://github.com/pipefunc/pipefunc/pull/26))
- Add Cache ABC ([28](https://github.com/pipefunc/pipefunc/pull/28))
- Cache improvement and rename ([27](https://github.com/pipefunc/pipefunc/pull/27))
- Add `with_cloudpickle` to `HybridCache` ([25](https://github.com/pipefunc/pipefunc/pull/25))
- Add `DiskCache` ([24](https://github.com/pipefunc/pipefunc/pull/24))
- Add root_args method ([23](https://github.com/pipefunc/pipefunc/pull/23))
- Add hype tag (AI) ([547c44d](https://github.com/pipefunc/pipefunc/commit/547c44d))
- Rewrite the intro in the README ([21](https://github.com/pipefunc/pipefunc/pull/21))

🔄 Pre-commit

- [pre-commit.ci] pre-commit autoupdate ([20](https://github.com/pipefunc/pipefunc/pull/20))
- [pre-commit.ci] pre-commit autoupdate ([19](https://github.com/pipefunc/pipefunc/pull/19))
- [pre-commit.ci] pre-commit autoupdate ([18](https://github.com/pipefunc/pipefunc/pull/18))
- [pre-commit.ci] pre-commit autoupdate ([17](https://github.com/pipefunc/pipefunc/pull/17))

📊 Stats

- `.yml`: +1 lines, -1 lines
- `.yaml`: +3 lines, -3 lines
- `.md`: +12 lines, -19 lines
- `.py`: +2411 lines, -1478 lines
- `.ipynb`: +2 lines, -2 lines

📝 Other

- Keep functions picklable ([5446653](https://github.com/pipefunc/pipefunc/commit/5446653))
- Use kwargs with derivers ([168b1c2](https://github.com/pipefunc/pipefunc/commit/168b1c2))
- Fix typo ([1aa0ee1](https://github.com/pipefunc/pipefunc/commit/1aa0ee1))
- Rename callables to derivers ([16](https://github.com/pipefunc/pipefunc/pull/16))
- Do not overwrite keys that exist in the sweep ([15](https://github.com/pipefunc/pipefunc/pull/15))
- Add `callables` and `product` to Sweep ([14](https://github.com/pipefunc/pipefunc/pull/14))
- Use Pipeline.leaf_nodes instead of unique tip ([12](https://github.com/pipefunc/pipefunc/pull/12))
- Call `update_wrapper` for correct signature ([11](https://github.com/pipefunc/pipefunc/pull/11))

📊 Stats

- `.py`: +402 lines, -29 lines

📝 Other

- Automatically set `output_name` if possible ([10](https://github.com/pipefunc/pipefunc/pull/10))
- Unique colors for combinable and non-combinable nodes ([9](https://github.com/pipefunc/pipefunc/pull/9))
- Fix coloring of combinable nodes ([8](https://github.com/pipefunc/pipefunc/pull/8))
- Allow constants in `Sweep`s ([7](https://github.com/pipefunc/pipefunc/pull/7))
- Allow constants in a Sweep ([4](https://github.com/pipefunc/pipefunc/pull/4))
- Fix line length ([5](https://github.com/pipefunc/pipefunc/pull/5))
- Color combinable and add test ([dfc44c0](https://github.com/pipefunc/pipefunc/commit/dfc44c0))
- remove cell ([0115807](https://github.com/pipefunc/pipefunc/commit/0115807))
- Rename reduce -> simplify ([ed4217a](https://github.com/pipefunc/pipefunc/commit/ed4217a))
- Remove incorrect copyright message ([a937aed](https://github.com/pipefunc/pipefunc/commit/a937aed))
- Update environment.yml ([88eb9ae](https://github.com/pipefunc/pipefunc/commit/88eb9ae))
- Skip plotting ([302f647](https://github.com/pipefunc/pipefunc/commit/302f647))
- Fix test dependencies (add pandas) ([b0d5c62](https://github.com/pipefunc/pipefunc/commit/b0d5c62))
- More pre-commit and typing fixes ([de022cd](https://github.com/pipefunc/pipefunc/commit/de022cd))
- Use ruff-format ([cea11f9](https://github.com/pipefunc/pipefunc/commit/cea11f9))
- Fix pre-commit issues ([a5d6f34](https://github.com/pipefunc/pipefunc/commit/a5d6f34))
- Update pre-commit filters ([238466b](https://github.com/pipefunc/pipefunc/commit/238466b))
- Fix pip install command in README.md ([5f6278e](https://github.com/pipefunc/pipefunc/commit/5f6278e))

🔄 Pre-commit

- [pre-commit.ci] pre-commit autoupdate ([3](https://github.com/pipefunc/pipefunc/pull/3))

📊 Stats

- `.py`: +366 lines, -78 lines
- `.yaml`: +6 lines, -8 lines
- `.md`: +2 lines, -2 lines
- `.yml`: +2 lines, -0 lines
- `.ipynb`: +101 lines, -79 lines
- `.toml`: +10 lines, -7 lines

Closed Issues

- Header ([1](https://github.com/pipefunc/pipefunc/issues/1))

📝 Other

- Add Python 3.12 classifier ([13091a9](https://github.com/pipefunc/pipefunc/commit/13091a9))
- Fix doc-string ([fc1b645](https://github.com/pipefunc/pipefunc/commit/fc1b645))
- Remove print statement ([7f64826](https://github.com/pipefunc/pipefunc/commit/7f64826))
- Install black[jupyter] in dev deps ([8669f08](https://github.com/pipefunc/pipefunc/commit/8669f08))
- Add saving ([8329ba5](https://github.com/pipefunc/pipefunc/commit/8329ba5))
- Unshallow clone in Readthedocs ([5d7ae83](https://github.com/pipefunc/pipefunc/commit/5d7ae83))
- Add shields ([1f09df6](https://github.com/pipefunc/pipefunc/commit/1f09df6))
- Fix type hint in _sweep.py ([d71ad78](https://github.com/pipefunc/pipefunc/commit/d71ad78))
- Another typo fix in all_transitive_paths ([8551a6a](https://github.com/pipefunc/pipefunc/commit/8551a6a))
- Fix type in doc-string ([18dcd2f](https://github.com/pipefunc/pipefunc/commit/18dcd2f))
- Add all_transitive_paths to get parallel and indepent computation chains ([2c0e8a9](https://github.com/pipefunc/pipefunc/commit/2c0e8a9))
- Add leaf and root nodes property ([f5ebacf](https://github.com/pipefunc/pipefunc/commit/f5ebacf))
- Fix _assert_valid_sweep_dict ([3485eec](https://github.com/pipefunc/pipefunc/commit/3485eec))
- Add get_min_sweep_sets ([a2d46d0](https://github.com/pipefunc/pipefunc/commit/a2d46d0))
- Rewrap text in doc-strings ([dc73186](https://github.com/pipefunc/pipefunc/commit/dc73186))
- Add all_execution_orders ([eaf71f5](https://github.com/pipefunc/pipefunc/commit/eaf71f5))
- Add conservatively_combine ([320b6ef](https://github.com/pipefunc/pipefunc/commit/320b6ef))
- rename 'add' to 'combine' ([558e23c](https://github.com/pipefunc/pipefunc/commit/558e23c))
- Remove [project.scripts] section from pyproject.toml ([0375761](https://github.com/pipefunc/pipefunc/commit/0375761))

📊 Stats

- `.yml`: +3 lines, -0 lines
- `.md`: +11 lines, -0 lines
- `.py`: +410 lines, -62 lines
- `.toml`: +2 lines, -4 lines

📝 Other

- Fix license in pyproject.toml ([5bec316](https://github.com/pipefunc/pipefunc/commit/5bec316))
- Set the project.readme to Markdown ([35d6496](https://github.com/pipefunc/pipefunc/commit/35d6496))
- Make sure to build the package ([a37873a](https://github.com/pipefunc/pipefunc/commit/a37873a))
- use pypa/gh-action-pypi-publish ([2775087](https://github.com/pipefunc/pipefunc/commit/2775087))
- Fix .github/workflows/update-environment.yaml ([58c7b6f](https://github.com/pipefunc/pipefunc/commit/58c7b6f))
- Move lite env and remove jupyterlite_config.json ([22bcd49](https://github.com/pipefunc/pipefunc/commit/22bcd49))
- Fix filename in .github/update-environment.py ([1ffd45f](https://github.com/pipefunc/pipefunc/commit/1ffd45f))
- Update environment.yml ([7c0d005](https://github.com/pipefunc/pipefunc/commit/7c0d005))
- No psutil in jupyterlite ([bcca216](https://github.com/pipefunc/pipefunc/commit/bcca216))
- Update environment.yml ([6d72ab5](https://github.com/pipefunc/pipefunc/commit/6d72ab5))
- Install matplotlib-base in jupyterlite env ([8dc665b](https://github.com/pipefunc/pipefunc/commit/8dc665b))
- Add filename to generate_environment_yml ([b7fed22](https://github.com/pipefunc/pipefunc/commit/b7fed22))
- Refactor .github/update-environment.py ([7375be2](https://github.com/pipefunc/pipefunc/commit/7375be2))
- add jupyterlite-xeus-python as pip only dep ([35ce643](https://github.com/pipefunc/pipefunc/commit/35ce643))
- add jupyterlite_config ([216956b](https://github.com/pipefunc/pipefunc/commit/216956b))
- Add kernel as docs dep ([23a7d7f](https://github.com/pipefunc/pipefunc/commit/23a7d7f))
- Use docs/environment-sphinx.yml for docs building and docs/environment.yml for juyterlite ([85b027c](https://github.com/pipefunc/pipefunc/commit/85b027c))
- Fix jupyterlite-sphinx name ([44bcd6b](https://github.com/pipefunc/pipefunc/commit/44bcd6b))
- Add docs/jupyterlite_config.json ([70fe3ae](https://github.com/pipefunc/pipefunc/commit/70fe3ae))
- Update environment.yml ([73819a3](https://github.com/pipefunc/pipefunc/commit/73819a3))
- add jupyterlite_sphinx ([23b3b20](https://github.com/pipefunc/pipefunc/commit/23b3b20))
- Copy notebook to docs/notebooks ([2765b15](https://github.com/pipefunc/pipefunc/commit/2765b15))
- Move __init__ doc-strings to class top ([ec20e2d](https://github.com/pipefunc/pipefunc/commit/ec20e2d))
- Add example to PipelineFunction ([4ff7796](https://github.com/pipefunc/pipefunc/commit/4ff7796))
- Fix example spacing in doc-string ([5af6054](https://github.com/pipefunc/pipefunc/commit/5af6054))
- Small docs settings changes ([55ba4d7](https://github.com/pipefunc/pipefunc/commit/55ba4d7))
- Rephrase in notebook ([c3f4613](https://github.com/pipefunc/pipefunc/commit/c3f4613))
- Rename readthedocs.yml to .readthedocs.yml ([8b9d8fa](https://github.com/pipefunc/pipefunc/commit/8b9d8fa))
- Remove maxdepth ([6c2d4d5](https://github.com/pipefunc/pipefunc/commit/6c2d4d5))
- chore(docs): update TOC ([2e1cce1](https://github.com/pipefunc/pipefunc/commit/2e1cce1))
- Remove design goals ([3fde37e](https://github.com/pipefunc/pipefunc/commit/3fde37e))
- Links in menu names ([550c3a2](https://github.com/pipefunc/pipefunc/commit/550c3a2))
- Add API docs ([94f206d](https://github.com/pipefunc/pipefunc/commit/94f206d))
- chore(docs): update TOC ([eb48cfa](https://github.com/pipefunc/pipefunc/commit/eb48cfa))
- Add Key Features 🚀 ([38f1508](https://github.com/pipefunc/pipefunc/commit/38f1508))
- Use the help() function ([a4a506c](https://github.com/pipefunc/pipefunc/commit/a4a506c))
- Add tutorial to docs ([568f609](https://github.com/pipefunc/pipefunc/commit/568f609))
- Different pip install optional deps ([633ee65](https://github.com/pipefunc/pipefunc/commit/633ee65))
- Add plotting to docs/environment.yml ([f13e5e7](https://github.com/pipefunc/pipefunc/commit/f13e5e7))
- Update environment.yml ([87baa91](https://github.com/pipefunc/pipefunc/commit/87baa91))
- Add pandas and jupytext as docs dependency ([8825351](https://github.com/pipefunc/pipefunc/commit/8825351))
- Add plotting to docs/environment.yml ([79dcf06](https://github.com/pipefunc/pipefunc/commit/79dcf06))
- Add header image ([eecf416](https://github.com/pipefunc/pipefunc/commit/eecf416))
- Change tagline ([8473f0f](https://github.com/pipefunc/pipefunc/commit/8473f0f))
- Pass through filename ([5fb85ab](https://github.com/pipefunc/pipefunc/commit/5fb85ab))
- chore(docs): update TOC ([d005501](https://github.com/pipefunc/pipefunc/commit/d005501))
- Add example.ipynb ([dde07c0](https://github.com/pipefunc/pipefunc/commit/dde07c0))
- Add tests/test_sweep.py ([59cdd99](https://github.com/pipefunc/pipefunc/commit/59cdd99))
- Add tests/test_pipefunc.py ([2258159](https://github.com/pipefunc/pipefunc/commit/2258159))
- Add tests/test_perf.py ([62b8cfc](https://github.com/pipefunc/pipefunc/commit/62b8cfc))
- Add tests/test_cache.py ([586ca6f](https://github.com/pipefunc/pipefunc/commit/586ca6f))
- Add tests/__init__.py ([85dc61f](https://github.com/pipefunc/pipefunc/commit/85dc61f))
- Add pipefunc/_version.py ([ce2d17f](https://github.com/pipefunc/pipefunc/commit/ce2d17f))
- Add pipefunc/_sweep.py ([a1e2fe5](https://github.com/pipefunc/pipefunc/commit/a1e2fe5))
- Add pipefunc/_plotting.py ([e89850c](https://github.com/pipefunc/pipefunc/commit/e89850c))
- Add pipefunc/_pipefunc.py ([6b94d38](https://github.com/pipefunc/pipefunc/commit/6b94d38))
- Add pipefunc/_perf.py ([8128bd7](https://github.com/pipefunc/pipefunc/commit/8128bd7))
- Add pipefunc/_cache.py ([d25c1a6](https://github.com/pipefunc/pipefunc/commit/d25c1a6))
- Add pipefunc/__init__.py ([0d3cd06](https://github.com/pipefunc/pipefunc/commit/0d3cd06))
- Add docs/source/index.md ([34d6fdb](https://github.com/pipefunc/pipefunc/commit/34d6fdb))
- Add docs/source/conf.py ([526ef73](https://github.com/pipefunc/pipefunc/commit/526ef73))
- Add docs/environment.yml ([053f01a](https://github.com/pipefunc/pipefunc/commit/053f01a))
- Add docs/Makefile ([7b68ec1](https://github.com/pipefunc/pipefunc/commit/7b68ec1))
- Add docs/.gitignore ([6664a3c](https://github.com/pipefunc/pipefunc/commit/6664a3c))
- Add environment.yml ([e82cf48](https://github.com/pipefunc/pipefunc/commit/e82cf48))
- Add setup.cfg ([25c5c63](https://github.com/pipefunc/pipefunc/commit/25c5c63))
- Add readthedocs.yml ([737d480](https://github.com/pipefunc/pipefunc/commit/737d480))
- Add pyproject.toml ([61ec5b9](https://github.com/pipefunc/pipefunc/commit/61ec5b9))
- Add README.md ([b25aebe](https://github.com/pipefunc/pipefunc/commit/b25aebe))
- Add MANIFEST.in ([150e5db](https://github.com/pipefunc/pipefunc/commit/150e5db))
- Add LICENSE ([a467d2e](https://github.com/pipefunc/pipefunc/commit/a467d2e))
- Add AUTHORS.md ([f9175ed](https://github.com/pipefunc/pipefunc/commit/f9175ed))
- Add .pre-commit-config.yaml ([882adb1](https://github.com/pipefunc/pipefunc/commit/882adb1))
- Add .gitignore ([129a4dc](https://github.com/pipefunc/pipefunc/commit/129a4dc))
- Add .github/workflows/update-environment.yaml ([a910911](https://github.com/pipefunc/pipefunc/commit/a910911))
- Add .github/workflows/toc.yaml ([81287cc](https://github.com/pipefunc/pipefunc/commit/81287cc))
- Add .github/workflows/release-drafter.yaml ([ca1a8cf](https://github.com/pipefunc/pipefunc/commit/ca1a8cf))
- Add .github/workflows/pythonpublish.yml ([f73479a](https://github.com/pipefunc/pipefunc/commit/f73479a))
- Add .github/workflows/pytest.yml ([e6ac7eb](https://github.com/pipefunc/pipefunc/commit/e6ac7eb))
- Add .github/workflows/codeql.yml ([1fdfdb6](https://github.com/pipefunc/pipefunc/commit/1fdfdb6))
- Add .github/update-environment.py ([74a4c56](https://github.com/pipefunc/pipefunc/commit/74a4c56))
- Add .github/release-drafter.yml ([0a3ce3d](https://github.com/pipefunc/pipefunc/commit/0a3ce3d))
- Add .gitattributes ([39666ce](https://github.com/pipefunc/pipefunc/commit/39666ce))

📊 Stats

- `.toml`: +1 lines, -1 lines