Platipy

What's Changed

This release fixes an issue when converting a contour containing holes from RTSTRUCT to NIfTI (271). Other changes include:
* Replace hardcoded interpolator values by pchlap in https://github.com/pyplati/platipy/pull/239
* Allow setting fold in nnUNet service by pchlap in https://github.com/pyplati/platipy/pull/246
* Read the label map in nnUNet service by pchlap in https://github.com/pyplati/platipy/pull/247
* `get_cmap`, `center_of_mass` deprecation updates by dalmouiee in https://github.com/pyplati/platipy/pull/256
* Add HD 95 metric by pchlap in https://github.com/pyplati/platipy/pull/249
* Support holes in RTSTRUCT contours by pchlap in https://github.com/pyplati/platipy/pull/271

New Contributors
* dalmouiee made their first contribution in https://github.com/pyplati/platipy/pull/256

**Full Changelog**: https://github.com/pyplati/platipy/compare/v0.7.1...v0.7.2

What's Changed
* Bump urllib3 from 2.0.4 to 2.0.6 by dependabot in https://github.com/pyplati/platipy/pull/234
* Bump pillow from 10.0.0 to 10.0.1 by dependabot in https://github.com/pyplati/platipy/pull/235
* Fix cast mask negated by pchlap in https://github.com/pyplati/platipy/pull/233


**Full Changelog**: https://github.com/pyplati/platipy/compare/v0.7.0...v0.7.1

This release resolves the issue of the cardiac segmentation tool producing slightly different results identified in https://github.com/pyplati/platipy/issues/224

A special thanks to denbonte & LennyN95 for identifying and helping to debug the issue!

What's Changed
* Add to README and CITATION.cff by pchlap in https://github.com/pyplati/platipy/pull/220
* Bump certifi from 2022.12.7 to 2023.7.22 by dependabot in https://github.com/pyplati/platipy/pull/223
* Bump pygments from 2.14.0 to 2.15.0 by dependabot in https://github.com/pyplati/platipy/pull/222
* Replace np.product with np.prod pending deprecation by StellarStorm in https://github.com/pyplati/platipy/pull/221
* Add total segmentator service by pchlap in https://github.com/pyplati/platipy/pull/228
* Update deprecated matplotlib colormaps by pchlap in https://github.com/pyplati/platipy/pull/227
* Bump jupyter-server from 2.7.0 to 2.7.2 by dependabot in https://github.com/pyplati/platipy/pull/231
* Visualisation and registration updates by rnfinnegan in https://github.com/pyplati/platipy/pull/198

New Contributors
* StellarStorm made their first contribution in https://github.com/pyplati/platipy/pull/221

**Full Changelog**: https://github.com/pyplati/platipy/compare/v0.6.1...v0.7.0

What's Changed
* Update poetry version in Dockerfile by pchlap in https://github.com/pyplati/platipy/pull/200
* added LV 17-segment model example by rnfinnegan in https://github.com/pyplati/platipy/pull/201
* Bump redis from 3.5.3 to 4.5.3 by dependabot in https://github.com/pyplati/platipy/pull/202
* Bump redis from 4.5.3 to 4.5.4 by dependabot in https://github.com/pyplati/platipy/pull/203
* Bump flask from 2.2.2 to 2.3.2 by dependabot in https://github.com/pyplati/platipy/pull/204
* 17 Segment LV Clean up code and prepare doc by pchlap in https://github.com/pyplati/platipy/pull/207
* Fix docs build by pchlap in https://github.com/pyplati/platipy/pull/210
* Bump tornado from 6.2 to 6.3.2 by dependabot in https://github.com/pyplati/platipy/pull/213
* Typo by jizhang02 in https://github.com/pyplati/platipy/pull/214

New Contributors
* jizhang02 made their first contribution in https://github.com/pyplati/platipy/pull/214

**Full Changelog**: https://github.com/pyplati/platipy/compare/v0.6.0...v0.6.1

Key Changes
* Duplicate code in rtstruct_to_nifti removed by GabrielePalazzo in https://github.com/pyplati/platipy/pull/171
* Bug fix for crop code by pchlap in https://github.com/pyplati/platipy/pull/175
* Fix issue with slashes in structure names by pchlap in https://github.com/pyplati/platipy/pull/177
* Suppress contour warning by pchlap in https://github.com/pyplati/platipy/pull/187
* Add dose visualisation function by pchlap in https://github.com/pyplati/platipy/pull/193
* updated APL metric by rnfinnegan in https://github.com/pyplati/platipy/pull/199

New Contributors
* GabrielePalazzo made their first contribution in https://github.com/pyplati/platipy/pull/171

**Full Changelog**: https://github.com/pyplati/platipy/compare/v0.5.0...v0.6.0

News
platipy has been migrate to use poetry to manage dependencies. The key feature this add is the use of certain dependencies only being available via extras. This makes the base platipy install much more lightweight, which can be installed using:

bash
pip install platipy


Extras for the cardiac segmentation, nnunet or backend service can be installed with:

bash
pip install platipy[cardiac]
pip install platipy[nnunet]
pip install platipy[backend]


What's Changed
* Correct cardiac image by pchlap in https://github.com/pyplati/platipy/pull/142
* Visualisation updates by rnfinnegan in https://github.com/pyplati/platipy/pull/145
* Ensure DICOM listener is started with service by pchlap in https://github.com/pyplati/platipy/pull/149
* Correct Verification for pynetdicom by pchlap in https://github.com/pyplati/platipy/pull/150
* Install the github version of platipy in the docker image for now... by pchlap in https://github.com/pyplati/platipy/pull/151
* Have the DICOM listener listen on all IP addresses by pchlap in https://github.com/pyplati/platipy/pull/152
* Convert Path to string before adding to DB by pchlap in https://github.com/pyplati/platipy/pull/153
* Functions to enable manual install of open cardiac model by pchlap in https://github.com/pyplati/platipy/pull/154
* use standard list rather than numpy for dilation kernel by pchlap in https://github.com/pyplati/platipy/pull/144
* Fix issue when ROI is completely missing from ROIContourSequence by pchlap in https://github.com/pyplati/platipy/pull/143
* WIP Dose metrics by rnfinnegan in https://github.com/pyplati/platipy/pull/156
* Poetry migrate by pchlap in https://github.com/pyplati/platipy/pull/155
* Dockerfile corrections by pchlap in https://github.com/pyplati/platipy/pull/159


**Full Changelog**: https://github.com/pyplati/platipy/compare/v0.4.1...v0.5.0