Pybbi

Latest version: v0.4.1

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0.3.2

Maintenance/bug fix

Removed internal usage of `six` (was dropped as requirement in previous release).

0.3.1

Maintenance

* Removed hard-coded library path in `setup.py` assuming x86-64 architecture to support build on other architectures like Apple Silicon aarch64. By pkerpedjiev (18)

**Full Changelog**: https://github.com/nvictus/pybbi/compare/v0.3.0...v0.3.1

0.3.0

New features

* Refactored bbi functions into a cdef class `BBIFile` obtained with `bbi.open()` (13). The function API is preserved.
* `BBIFile` adds support to read and parse a bigBed's AutoSql schema definition
* AutoSql scalar types are mapped to numpy/pandas dtypes
* AutoSql listed/array types or other exotic types are treated as regular strings

API changes

* `fetch_intervals` takes an additional `iterator` parameter. If True, it will return an interval iterator (of tuples) with the same behavior as in v0.2. If False, returns a dataframe with columns correctly parsed using the AutoSql schema. The class method returns a dataframe by default, and the function returns the iterator by default to preserve existing behavior.
* Python 2.7 support has been dropped.

0.2.3

* Add summary statistic `sum` 12

0.2.2

Bug fixes
* Fixed open file leaks when Python exceptions are raised.

API changes
* `stackup` now allows passing unequal interval lengths when the `bins` parameter is specified.

0.2.1

Backported fixes to make s3 signed urls, and 307/308 redirects work
* My original PR: ucscGenomeBrowser/kent23
* Their changes: ucscGenomeBrowser/kent7807b5c

Distributing manylinux and osx wheels

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