Added
- This CHANGELOG
- Combine command to simply combine output tsv's into one file
- Length offset to filter sequences post-clustering
- Option to `--skip-trimming` in extract
- Config file to improve UX
Changed
- Entire CLI was redesigned around click/rich
- When performing adapter trimming the min/max length is set to length +/- Levenshtein distance
- Sample Queue table is formatted inline with new CLI
- Dropped regex in "extract" in favor of simple string matching
- Merge can take unzipped fastqs now