Pydamage

What's Changed
* Increased statistical power: G to A on reverse aligned reads are now also taken into account in damage modelling
* New feature: base quality rescaling: https://pydamage.readthedocs.io/en/0.80/rescaling.html
* Various bug fixes, and performance optimization


**Full Changelog**: https://github.com/maxibor/pydamage/compare/0.72...0.80

Changelog:
- Fix the reference column not being written to csv output. Thanks to rozwalak for reporting it !

Changelog:
- Add option to filter out reference sequences shorter than threshold with `--minlen`

Changelog

* Remove pypmml dependancy https://github.com/maxibor/pydamage/pull/23
* The GLM model prediction is now performed in native python
* Fix memory issue when making more than 20 plots 35dc2de9b156c3323f7cadcb5c106f399f7c8fdc
* ski references with 0 aligned reads 2cab44dce5b1e40cd7c0363ab2b11216a5712bba

Changelog
- Update citation command to PeerJ
- Update documentation

Changelog

- Fix issue 19
- More flexible exit with warnings if alignment file is empty