Pyds-cli

This release includes several improvements to the project, including streamlining the release process, enhancing test coverage, and updating the project template.

New Features

- Automated release notes generation and commit using `llamabot` (08e24ed, Eric Ma)
- Added tests for talk initialization and removed deprecated project init test (e580139, Eric Ma)
- Enhanced project initialization and update tests (503193c, Eric Ma)
- Removed talk\_name parameter from init function (b8e659c, Eric Ma)
- Removed conda activation from test workflow (852939a, Eric Ma)
- Added affiliation field and updated title placeholder in talk template (95a353e, Eric Ma)
- Added 'sh' library to project dependencies (2e24c17, Eric Ma)
- Replaced run() with sh.which in discover\_conda\_executable (19bffb5, Eric Ma)
- Updated micromamba version to latest in pr-tests.yaml workflow (83855ac, Eric Ma)
- Added micromamba support in discover\_conda\_executable (bbc336a, Eric Ma)
- Added clean target to PHONY in Makefile (09867ec, Eric Ma)
- Upgraded micromamba version to 1.8.1 (21e4ac6, Eric Ma)
- Enhanced cookiecutter.json and renamed files in talk template (afb32a1, Eric Ma)
- Streamlined CLI commands and improved project initialization (c6084ec, Eric Ma)
- Simplified project initialization process using cookiecutter (8c71c86, Eric Ma)
- Removed mamba from dependencies (69807ad, Eric Ma)
- Added cookiecutter to project dependencies (e580010, Eric Ma)
- Simplified environment variable function names (62736b6, Eric Ma)
- Removed mamba from dependencies (9971110, Eric Ma)
- Updated variable names and added new variables in cookiecutter.json (3660324, Eric Ma)
- Updated variable naming convention in project templates (f0a6737, Eric Ma)
- Renamed project template files in pyds (de86484, Eric Ma)
- Added project template configuration and updated file paths (21fbd09, Eric Ma)
- Replaced miniconda with micromamba in PR tests workflow (542facb, Eric Ma)
- Replaced miniconda setup with micromamba in GitHub workflows (460c3cb, Eric Ma)
- Added project and talk template directory paths (f1db6e7, Eric Ma)
- Specified Python version in GitHub workflow (9183364, Eric Ma)
- Removed black from pre-commit hooks (558fe0a, Eric Ma)
- Restructured project templates and removed unused files (a4a2921, Eric Ma)
- Updated template directory path and cleanup unused code (baf1112, Eric Ma)
- Added 'talk' command to pyds CLI (6d08cc6, Eric Ma)
- Added talk initialization command (f070660, Eric Ma)
- Added cookiecutter to dependencies (b040201, Eric Ma)
- Added talk template to pyds-cli (a858a04, Eric Ma)
- Added Makefile for talk presentations (e4f60c9, Eric Ma)
- Added GitHub Actions workflow and .gitignore for talk slides (bb0abb2, Eric Ma)
- Relocated template files to 'repo' subdirectory (e10f349, Eric Ma)

Bug Fixes

- Removed redundant activation of base environment in conda update command (dc660dc, Eric Ma)
- Added coverage omission for test files (b31d191, Eric Ma)
- Added coverage configuration to omit patterns (95565d4, Eric Ma)

Deprecations

- None in this release

This new version introduces an optional feature for automatic generation of release notes and improves the quality of the code that is released to PyPI by ensuring that it passes all pre-commit checks. It also simplifies the testing workflow by removing an unnecessary step.

New Features

- Added an optional feature for automatic generation of release notes. This feature uses the llamabot tool and the pre-commit tool to ensure that all generated files adhere to the file quality standards. (503a4da) (Eric Ma)
- Updated the PyPI release workflow to include pre-commit. This change ensures that all files pass the pre-commit checks before a release is made. (d58f176) (Eric Ma)

Bug Fixes

- No bug fixes in this release.

Deprecations

- Removed the step for uploading code coverage in the GitHub Actions workflow file pr-tests.yaml. This step was previously using the codecov/codecov-actionv2 action. (eda5ef8) (Eric Ma)

Other Changes

- Bumped version from 0.3.8 to 0.3.9. (475dbe) (github-actions)
- Specified exact string to look for when bumping versions. (b799733) (Eric Ma)

This new version includes several updates to the testing environment, pre-commit hooks, and GitHub Actions workflow. It also introduces a change to the setuptools configuration in the pyproject.toml.j2 template.

New Features

- The pytest fixture scope in the cli tests has been changed from "session" to "function", ensuring a more isolated testing environment (23ad0d0) (Eric Ma)
- The versions of pre-commit hooks have been updated to their latest versions, and the darglint hook has been replaced with pydoclint for better documentation linting (23ad0d0) (Eric Ma)
- The pytest fixture scope in the conftest.py file has been changed from "function" to "session", potentially improving the performance of the test suite (23ad0d0) (Eric Ma)
- The conda tests for rebuild and update now expect an exit code of 1 instead of 0, reflecting the assumption that these tests are always executed from within a conda environment, not the base environment (23ad0d0) (Eric Ma)
- The trigger events for the GitHub Actions workflow have been modified to include both pull requests and pushes to the main branch, and the version of the checkout action has been updated from v2 to v4 (52b7520) (Eric Ma)
- The setuptools configuration in the pyproject.toml.j2 template has been updated. The 'packages' field under 'tool.setuptools' has been replaced with a 'where' field under 'tool.setuptools.packages.find', allowing for more flexible package discovery (4fc10ff) (Eric Ma)

Bug Fixes

- None in this release.

Deprecations

- None in this release.

This new version includes several improvements to the GitHub Actions workflow, code readability, and the release process. The GitHub Actions checkout step has been upgraded to version 4, with fetch-depth and fetch-tags options enabled. Code readability has been enhanced in several files, with long strings split into multiple lines and import statements rearranged. The release process now includes the generation of release notes using the llamabot tool.

New Features

- The GitHub Actions checkout step has been upgraded to version 4, with fetch-depth and fetch-tags options enabled to ensure all tags and history are fetched during the checkout process (bbaad2 and 4a0184) (Eric Ma)
- Release notes generation using the llamabot tool has been added to the PyPI package release workflow. The release notes are then added to the GitHub release body, automating the process of generating and adding release notes to each new release (a6685b) (Eric Ma)

Bug Fixes

- No bug fixes in this release.

Deprecations

- The typer command has been removed from the docs.yaml.j2 workflow file. The command was previously used to generate documentation, but is no longer necessary (43b773) (Eric Ma)