Pylemur

- Sync with cookiecutter-template update (version 0.4)
- Bump required Python version to `3.10`
- Allow data frames as design matrices
- Allow matrices as input to LEMUR()

- Change example gene to one with clearer differential expression pattern
- Remove error output in `align_harmony

Major rewrite of the API. Instead of adding coefficients as custom fields
to the input `AnnData` object, the API now follows an object-oriented style
similar to scikit-learn or `SCVI`. This change was motivated by the feedback
during the submission to the `scverse` ecosystem.
([Thanks](<(https://github.com/scverse/ecosystem-packages/pull/156#issuecomment-2014676654)>) Gregor).

Changed

- Instead of calling `fit = pylemur.tl.lemur(adata, ...)`, you now create a LEMUR model
(`model = pylemur.tl.LEMUR(adata, ...)`) and subsequently call `model.fit()`, `model.align_with_harmony()`,
and `model.predict()`.

- Initial beta release of `pyLemur`