Pymsaviz

Change Log

Changed

- Dropped python3.8 support
- Switched package manager `poetry` to `rye`

Fixed

- Fixed consensus sequence extraction code to suppress biopython deprecated warning message

Change Log

Bug Fix

- Fixed bug due to matplotlib v3.8.0 changes ([link](https://github.com/matplotlib/matplotlib/blob/39582424f8ce5e042e4e39eeac94893f222c9f8b/lib/matplotlib/colors.py#L438-L442))

Change Log

Improvement

- Added `--label_type` option to CLI
- Fixed `mv.savefig()` to suppress memory leak during multiple plots
- Changed linter `flake8` to `ruff`
- Changed `set_layout_engine()` to `tight_layout()` for matplotlib backward compatibility (7)

Change Log

Improvement

- Added `label_type` option to show full description label (6)
- Changed to set default color when `set_custom_color_func()` return value is set to None.

Bug Fix

- Fixed duplicate name error in case sorting msa (6)

https://github.com/moshi4/pyMSAviz/compare/v0.3.0...v0.4.0

Change Log

Improvement

- Added `set_custom_color_func()` method
- Removed upper bound version constraint in dependencies

https://github.com/moshi4/pyMSAviz/compare/v0.2.2...v0.3.0

Change Log

Minor Change

- Drop python3.7 support
- Add `ticks_interval=None` option to disable ticks interval display

Bug Fix

- Fix MSA load functionality from URL

https://github.com/moshi4/pyMSAviz/compare/v0.2.1...v0.2.2