Pyneuroml

What's Changed
* feat(annotations): improve for use as embedded annotations by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/350
* More annotation tweaks: remove unused ids, use `rdf:li` by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/353
* fix(nml-channel-analysis): include `ionChannelVShift` by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/356
* Updates to xpp running/plotting by pgleeson in https://github.com/NeuroML/pyNeuroML/pull/355
* feat(rotation): allow users to pick if they want a copy by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/361
* animate matplotlib plots by YBCS in https://github.com/NeuroML/pyNeuroML/pull/348
* Feat/test animate plots by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/365
* feat(pynml-modchananalysis): add labels and fix file name by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/352
* Better handling of nested if statements in xpp parser by pgleeson in https://github.com/NeuroML/pyNeuroML/pull/368


**Full Changelog**: https://github.com/NeuroML/pyNeuroML/compare/v1.2.12...v1.2.13

What's Changed
* feat(annotations): extend to allow both miriam and biosimulations styles by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/349


**Full Changelog**: https://github.com/NeuroML/pyNeuroML/compare/v1.2.11...v1.2.12

What's Changed
* feat(optional-deps): add warnings to inform users of optional packages by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/346


**Full Changelog**: https://github.com/NeuroML/pyNeuroML/compare/v1.2.10...v1.2.11

What's Changed
* Minor fixes and tests for XPP export; to v1.2.10 by pgleeson in https://github.com/NeuroML/pyNeuroML/pull/343
* feat(annotations): add wrapper to write annotations by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/339
* chore: move to ruff by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/345
* creating and sending omex archives to biosimulations by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/344


**Full Changelog**: https://github.com/NeuroML/pyNeuroML/compare/v1.2.9...v1.2.10

What's Changed
* feat: split vispy into qt5 and qt6 deps by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/314
* Feat/issue 321: add a parallel runner by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/325
* add -swc in pynml by YBCS in https://github.com/NeuroML/pyNeuroML/pull/326
* feat(LEMSSimulation): allow using float/str for duration/dt by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/332
* figures generated by `pynml-modchananalysis` are saved by default by YBCS in https://github.com/NeuroML/pyNeuroML/pull/327
* pynml-archive: add `-sedml` by sanjayankur31 in https://github.com/NeuroML/pyNeuroML/pull/335
* Initial version of pynml-xpp, for parsing XPP files and converting to LEMS by pgleeson in https://github.com/NeuroML/pyNeuroML/pull/338

New Contributors
* YBCS made their first contribution in https://github.com/NeuroML/pyNeuroML/pull/326

**Full Changelog**: https://github.com/NeuroML/pyNeuroML/compare/v1.2.7...v1.2.9

What's Changed
* To v1.2.7 and some updates to -run-tellurium by pgleeson in https://github.com/NeuroML/pyNeuroML/pull/312


**Full Changelog**: https://github.com/NeuroML/pyNeuroML/compare/v1.2.5...v1.2.7