Pyproteome

Latest version: v0.11.2

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0.8.0

Changes

- Reorganized DataSet, Protein, Sequence, Modification modules into a single
package (pyproteome.data_sets).

0.7.2

Features

- Significant improvements to documentation.
- Cleaned up several figure layouts.

Bug fixes

- Fixed install from pip.

0.7.1

Features

- More consistent figure + text sizes.
- Added tables.write_csv function.

0.7.0

Features

- Many improvements to GSEA / PSEA calculations. Added functionality for
remapping phosphosites between species.
- Renamed several functions / parameters for more consistent naming.
- Added QC module for validation of peptide quantification robustness.
- Re-wrote several plotting functions to use seaborn for pretty figures.
- Changed normalization calculations to fit to the mode, rather than the
median channel ratio.

0.6.1

Bug fixes

- Fixed PyPI deployment issues.

0.6.0

Features

- Improvements to ProteomeDiscoverer feature support (percolator, phosphoRS).
- Many organizational changes.
- Improvements to clustering module.
- Added pathways module for GSEA / PSEA.

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