- Reorganized DataSet, Protein, Sequence, Modification modules into a single package (pyproteome.data_sets).
0.7.2
Features
- Significant improvements to documentation. - Cleaned up several figure layouts.
Bug fixes
- Fixed install from pip.
0.7.1
Features
- More consistent figure + text sizes. - Added tables.write_csv function.
0.7.0
Features
- Many improvements to GSEA / PSEA calculations. Added functionality for remapping phosphosites between species. - Renamed several functions / parameters for more consistent naming. - Added QC module for validation of peptide quantification robustness. - Re-wrote several plotting functions to use seaborn for pretty figures. - Changed normalization calculations to fit to the mode, rather than the median channel ratio.
0.6.1
Bug fixes
- Fixed PyPI deployment issues.
0.6.0
Features
- Improvements to ProteomeDiscoverer feature support (percolator, phosphoRS). - Many organizational changes. - Improvements to clustering module. - Added pathways module for GSEA / PSEA.