Pyrepseq

Object-oriented fast lookup implementations for speeding up repeated computations.

What's Changed
* New information theory functions by jhenderson0 in https://github.com/andim/pyrepseq/pull/45
* Symdel progress bar by MVCowley in https://github.com/andim/pyrepseq/pull/46

New Contributors
* MVCowley made their first contribution in https://github.com/andim/pyrepseq/pull/46

**Full Changelog**: https://github.com/andim/pyrepseq/compare/v1.4.3...v1.5

What's Changed
* Improve pc tests by yutanagano in https://github.com/andim/pyrepseq/pull/31
* Catch import errors for optional dependencies by andim in https://github.com/andim/pyrepseq/pull/35
* Fix bug in pcDelta when setting maxseqs by yutanagano in https://github.com/andim/pyrepseq/pull/38
* Update README.md by yutanagano in https://github.com/andim/pyrepseq/pull/40
* Improve cdr levenshtein by yutanagano in https://github.com/andim/pyrepseq/pull/39
* Update tcrdist names to capitalised form (TCRdist) by yutanagano in https://github.com/andim/pyrepseq/pull/43
* Bump patch to v1.4.3 by yutanagano in https://github.com/andim/pyrepseq/pull/44


**Full Changelog**: https://github.com/andim/pyrepseq/compare/v1.4.2...v1.4.3

What's Changed
* Fix function call discrepancies between TcrMetric and Tcrdist variants
* Nearest-neighbor fix to TCRdist weighting of indels vs substitutions, renamed internal function 'symspell' -> 'symdel' for clarity

* Bug fix for Cdr3Levenshtein metric and relatives: now no longer requires V gene data to function
* Bug fix for `pyrepseq.pc`: now properly handles coincidence calculations accross multiple features

New functionality:
- Full integration of flexible metric module throughout downstream functions (pcDelta, plotting etc.)
- added seqs to regex converter

Fixes:
- nn fixes for cross-set searches

New Contributors
* rsaxena20 made their first contribution in https://github.com/andim/pyrepseq/pull/17

**Full Changelog**: https://github.com/andim/pyrepseq/compare/v1.3...v1.4