Pyribs

Latest version: v0.0.2

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0.5.2

This release contains miscellaneous edits to our documentation from v0.5.1.
Furthermore, the library is updated to support Python 3.11, removed deprecated
options, and strengthened with more robust checks and error messages in the
schedulers.

Changelog

API

- Support Python 3.11 (342)
- Check that emitters passed in are lists/iterables in scheduler (341)
- Fix Matplotlib `get_cmap` deprecation (340)
- **Backwards-incompatible:** Default `plot_centroids` to False when plotting
(339)
- Raise error messages when `ask` is called without `ask_dqd` (338)

Documentation

- Add BibTex citation for GECCO 2023 (337)

Improvements

- Update distribution dependencies (344)

0.5.1

This release contains miscellaneous edits to our documentation from v0.5.0.
There were no changes to library functionality in this release.

0.5.0

To learn about this release, see our page on What's New in v0.5.0:
https://docs.pyribs.org/en/stable/whats-new.html

Changelog

API

- Schedulers warn if no solutions are inserted into archive (320)
- Implement `BanditScheduler` (299)
- **Backwards-incompatible:** Implement Scalable CMA-ES Optimizers (274, 288)
- Make ribs.emitters.opt public (281)
- Add normalized QD score to ArchiveStats (276)
- **Backwards-incompatible:** Make ArchiveStats a dataclass (275)
- **Backwards-incompatible:** Add shape checks to `tell()` and `tell_dqd()`
methods (269)
- Add method for computing CQD score in archives (252)
- **Backwards-incompatible:** Deprecate positional arguments in constructors
(261)
- **Backwards-incompatible:** Allow custom initialization in Gaussian and
IsoLine emitters (259, 265)
- Implement CMA-MAE archive thresholds (256, 260, 314)
- Revive the old implementation of `add_single` removed in (221)
- Add separate tests for `add_single` and `add` with single solution
- Fix all examples and tutorials (253)
- Add restart timer to `EvolutionStrategyEmitter` and
`GradientArborescenceEmitter`(255)
- Rename fields and update documentation (249, 250)
- **Backwards-incompatible:** rename `Optimizer` to `Scheduler`
- **Backwards-incompatible:** rename `objective_value` to `objective`
- **Backwards-incompatible:** rename `behavior_value`/`bcs` to `measures`
- **Backwards-incompatible:** `behavior_dim` in archives is now `measure_dim`
- Rename `n_solutions` to `batch_size` in `Scheduler`.
- Add `GradientArborescenceEmitter`, which is used to implement CMA-MEGA (240,
263, 264, 282, 321)
- Update emitter `tell()` docstrings to no longer say "Inserts entries into
archive" (247)
- Expose `emitter.restarts` as a property (248)
- Specify that `x0` is 1D for all emitters (244)
- Add `best_elite` property for archives (237)
- Rename methods in ArchiveDataFrame and rename as_pandas behavior columns
(236)
- Re-run CVTArchive benchmarks and update CVTArchive (235, 329)
- **Backwards-incompatible:** `use_kd_tree` now defaults to True since the k-D
tree is always faster than brute force in benchmarks.
- Allow adding solutions one at a time in optimizer (233)
- Minimize numba usage (232)
- **Backwards-incompatible:** Implement batch addition in archives (221, 242)
- `add` now adds a batch of solutions to the archive
- `add_single` adds a single solution
- `emitter.tell` now takes in `status_batch` and `value_batch` (227)
- Make epsilon configurable in archives (226)
- **Backwards-incompatible:** Remove ribs.factory (225, 228)
- **Backwards-incompatible:** Replaced `ImprovementEmitter`,
`RandomDirectionEmitter`, and `OptimizingEmitter` with
`EvolutionStrategyEmitter` (220, 223, 278)
- Raise ValueError for incorrect array shapes in archive methods (219)
- Introduced the Ranker object, which is responsible for ranking the solutions
based on different objectives (209, 222, 245)
- Add index_of_single method for getting index of measures for one solution
(214)
- **Backwards-incompatible:** Replace elite_with_behavior with retrieve and
retrieve_single in archives (213, 215, 295)
- **Backwards-incompatible:** Replace get_index with batched index_of method in
archives (208)
- Also added `grid_to_int_index` and `int_to_grid_index` methods for
`GridArchive` and `SlidingBoundariesArchive`
- **Backwards-incompatible:** Made it such that each archive is initialized
fully in its constructor instead of needing a separate
.initialize(solution_dim) call (200)
- **Backwards-incompatible:** Add `sigma`, `sigma0` options to
`gaussian_emitter` and `iso_line_emitter` (199)
- `gaussian_emitter` constructor requires `sigma`; `sigma0` is optional.
- `iso_line_emitter` constructor takes in optional parameter `sigma0`.
- **Backwards-incompatible:** Add `cbar`, `aspect` options for
`cvt_archive_heatmap` (197)
- **Backwards-incompatible:** Add `aspect` option to `grid_archive_heatmap` +
support for 1D heatmaps (196)
- `square` option no longer works
- **Backwards-incompatible:** Add `cbar` option to `grid_archive_heatmap` (193)
- **Backwards-incompatible:** Replace `get_random_elite()` with batched
`sample_elites()` method (192)
- **Backwards-incompatible:** Add EliteBatch and rename fields in Elite (191)
- **Backwards-incompatible:** Rename bins to cells for consistency with
literature (189)
- Archive constructors now take in `cells` argument instead of `bins`
- Archive now have a `cells` property rather than a `bins` property
- **Backwards-incompatible:** Only use integer indices in archives (185)
- `ArchiveBase`
- Replaced `storage_dims` (tuple of int) with `storage_dim` (int)
- `_occupied_indices` is now a fixed-size array with `_num_occupied`
indicating its current usage, and `_occupied_indices_cols` has been
removed
- `index_of` must now return an integer

Bugs

- Fix boundary lines in sliding boundaries archive heatmap (271)
- Fix negative eigenvalue in CMA-ES covariance matrix (285)

Documentation

- Speed up lunar lander tutorial (319)
- Add DQDTutorial (267)
- Remove examples extra in favor of individual example deps (306)
- Facilitate linking to latest version of documentation (300)
- Update lunar lander tutorial with v0.5.0 features (292)
- Improve tutorial and example overviews (291)
- Move tutorials out of examples folder (290)
- Update lunar lander to use Gymnasium (289)
- Add CMA-MAE tutorial (273, 284)
- Update README (279)
- Add sphinx-codeautolink to docs (206, 280)
- Fix documentation rendering issues on ReadTheDocs (205)
- Fix typos and formatting in docstrings of `ribs/visualize.py` (203)
- Add in-comment type hint rich linking (204)
- Upgrade Sphinx dependencies (202)

Improvements

- Move threadpoolctl from optimizer to CMA-ES (241)
- Remove unnecessary emitter benchmarks (231)
- Build docs during CI/CD workflow (211)
- Drop Python 3.6 and add Python 3.10 support (181)
- Add procedure for updating changelog (182)
- Add 'visualize' extra (183, 184, 302)

0.4.0

To learn about this release, see our blog post: https://pyribs.org/blog/0-4-0

Changelog

API

- Add ribs.visualize.parallel_axes_plot for analyzing archives with
high-dimensional BCs (92)
- **Backwards-incompatible:** Reduce attributes and parameters in EmitterBase to
make it easier to extend (101)
- In Optimizer, support emitters that return any number of solutions in ask()
(101)
- **Backwards-incompatible:** Store metadata in archives as described in 87
(103, 114, 115, 119)
- **Backwards-incompatible:** Rename "index" to "index_0" in
CVTArchive.as_pandas for API consistency (113)
- **Backwards-incompatible:** Make index_of() public in archives to emphasize
each index's meaning (128)
- **Backwards-incompatible:** Add index to get_random_elite() and
elite_with_behavior() in archives (129)
- Add clear() method to archive (140, 146)
- Represent archive elites with an Elite namedtuple (142)
- Add len and iter methods to archives (151, 152)
- Add statistics to archives (100, 157)
- Improve manipulation of elites by modifying as_pandas (123, 149, 153, 158,
168)
- Add checks for optimizer array and list shapes (166)

Documentation

- Add bibtex citations for tutorials (122)
- Remove network training from Fooling MNIST tutorial (161)
- Fix video display for lunar lander in Colab (163)
- Fix Colab links in stable docs (164)

Improvements

- Add support for Python 3.9 (84)
- Test with pinned versions (110)
- Increase minimum required versions for scipy and numba (110)
- Refactor as_pandas tests (114)
- Expand CI/CD to test examples and tutorials (117)
- Tidy up existing tests (120, 127)
- Fix vocab in various areas (138)
- Fix dependency issues in tests (139)
- Remove tox from CI (143)
- Replace "entry" with "elite" in tests (144)
- Use new archive API in ribs.visualize implementation (155)

0.3.1

This release features various bug fixes and improvements. In particular, we have
added tests for SlidingBoundariesArchive and believe it is ready for more
rigorous use.

Changelog

- Move SlidingBoundariesArchive out of experimental by adding tests and fixing
bugs (93)
- Added nicer figures to the Sphere example with `grid_archive_heatmap` (86)
- Added testing for Windows and MacOS (83)
- Fixed package metadata e.g. description

0.3.0

pyribs is now in beta. Since our alpha release (0.2.0), we have polished the
library and added new tutorials and examples to our documentation.

Changelog

- Added a Lunar Lander example that extends the lunar lander tutorial (70)
- Added New Tutorial: Illuminating the Latent Space of an MNIST GAN (78)
- GridArchive: Added a boundaries attribute with the upper and lower bounds of
each dimension's bins (76)
- Fixed a bug where CMA-ME emitters do not work with float32 archives (74)
- Fixed a bug where Optimizer is able to take in non-unique emitter instances
(75)
- Fixed a bug where GridArchive failed for float32 due to a small epsilon (81)
- Fix issues with bounds in the SlidingBoundaryArchive (77)
- Added clearer error messages for archives (82)
- Modified the Python requirements to allow any version above 3.6.0 (68)
- The wheel is now fixed so that it only supports py3 rather than py2 and py3
(68)
- Miscellaneous documentation fixes (71)

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