This release fixes an issue where the container images weren't properly updating after a new pySCENIC version was released.
0.9.3
- CLI: ability to choose algorithm used for gene regulatory network reconstruction. - CLI: When loom file requested as output of aucell step, the regulon AUC values are appended as column attributes of a newly created loom file.
0.9.2
Minor updates for compatibility with SCope.
0.9.1
- CLI: BugFix for issue https://github.com/aertslab/pySCENIC/issues/39
0.9.0
- Command Line Interface (CLI): support for more file formats (e.g. loom and GMT format). - Command Line Interface (CLI): new 'csv2loom' utility to convert an expression matrix as csv to loom. - Differentiation of dependencies for CLI and Jupyter notebook usage: matplotlib dependency removed from the former.
0.8.16
Removed support for direct pruning of modules to regulons without the enriched motif table as intermediate.