Pyssa

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Added
+++++
- Updated ``direct_naive`` docstring
- Support for the ``tau_leaping`` algorithm
- Species name support for plotting

Fixed
+++++
- Check for sum propensities uses threshold instead of equality
- Add check for type of ``max_iter``

Changed
+++++++
- Update ``roulette_selection`` to use `np.searchsorted`
- Minor changes to ``numpy`` style usage

Chore
+++++
- Add ``codecov``
- Travis pypi autodepolyment
- Parameterize tests with algorithm name
- Add details about ``tau_leaping`` to docs and README

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Added
+++++
- badge to readme

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Added
+++++
- plot to pypi

Changed
+++++++
- fix bumpversion/black issue
- remove history from package long_description

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First public release!!

Added
+++++
- testpypi deployment
- pyup security checking
- readthedocs deployment
- Tutorials and documentation
- Plotting functionality through ``Simulation.plot``

Changed
+++++++
- ``Simulation.results`` is now a property
- Updated tests to support the new api changes

Chore
+++++
- Updated the README

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Added
+++++
- ``Simulation`` class - main class for running simulations
- ``Results`` class - for storing and acessing simulation results
- ``Simulation.simulate`` function that returns an instance of the ``Results`` class

Changed
+++++++
- Refactor ``get_kstoc`` and ``roulette_selection`` into ``utils.py``
- Refactor ``direct_naive`` into ``direct_naive.py``
- Delete ``pyssa.py`` and replace with ``Simulation`` class

Chore
+++++
- Add license and code-style badges
- Use ``black`` for code-formatting

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Added
+++++

- Naive implementation of the Gillepsie algorithm in ``numba``
- Tests - sanity checks, bifurcation and long running simulation
- CI on ``travis``