Pytest-ngsfixtures

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Bugfixes
++++++++

* Fix layout for multi-run samples (61)

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Bugfixes
++++++++

* Update busybox images for tests (59)
* Fix failing test (58)

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Breaking changes
+++++++++++++++++

This is a major update in which the API has changed considerably.
Notably, most of the code for generating fixtures has been removed and
refactored completely. Most importantly, the factory functions have
been replaced by a small number of fixtures that can be configured via
the `pytest.mark` helper.

In addition, most data files have been removed
in an attempt to make the package as small as possible. As the
location of test data has been decoupled from package functionality,
it makes more sense to distribute package data separately.

See the API documentation for more information.


Features
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* Remove application data (30)
* Simplify config.runfmt_alias function (56)
* Only package tiny sequence data (55)
* Simplify sample layout configuration (57)

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* Add docker-py as a dependency (52)

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* Remove obsolete working directory argument - requires snakemake >=
4.4.0
* Install correct docker API (50)
* Allow modifying path in shell wrapper (51)

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Add shell wrappers and wrappers for easily setting up workflow tests.

Add tutorial.

Bugfixes.

* Update pypi badge
* Remove tox.ini
* Defer setting alias to FixtureFile (42)
* ReadFixtureFile.SM now returns id (39)
* Options ngs_layout and ngs_runfmt are now lists (41)
* Update project layout configuration (40)
* Add function to return runfmt and alias as tuple (43)
* Read 1 and 2 have same id when alias required (45)
* Census is not increased for read 2 (44)
* Add option to only setup sampleinfo (47)
* Add tutorial (46)
* Add working snakemake tests (8)