Python-irodsclient

This major release primarily focuses on the removal of Python 2 compatibility. With that comes improvements for PAM authentication and facilities to help with cleaning up resources on program shutdown.

Changed

- Remove Python 2 compatibility (480).
- Format codebase using Black formatter (615).
- Expose keyword parameter for controlling whether the .irodsA file is to be overwritten (635).
- Check environment variable is defined before use, to avoid SyntaxError (641).
- Improve documentation (651, 654).
- Replace use of `utcfromtimestamp` and `utcnow` (670).

Fixed

- Correct faulty GenQuery1 column mappings (642, 643).
- Escape special characters in passwords for PAM authentication (649, 650).
- Catch `ENOTCONN` error from `socket.shutdown()` on BSD/MacOS (657).
- Remove call to initialize log facilities on import of irods module (660).

Added

- Provide mechanism for registering deterministic execution of cleanup functions on program shutdown (614).
- Add `SYS_LIBRARY_ERROR` to irods.exception module (668).

Changed

- Bump server compatibility to iRODS 4.3.3 (3).
- Limit maximum value for connection timeouts (623).
- Disable client redirection to resource, by default (626, 627).

Fixed

- Adjust use of imported symbols from module for testing (613).
- Modify the correct object in session.clone() for `ticket_applied` attribute (619).
- Correct ticket expire example in README (630).

Added

- Attach server response to exception as `server_msg` attribute (606).
- Add `CAT_TICKET_USES_EXCEEDED` to irods.exception module (632).

- [3] v2.1.0 and update changelog [Terrell Russell]
- [3] allow genquery2_test to work under all Python2/3 versions [Daniel Moore]
- [3] call assertRaisesRegex[p] with/without final 'p' (depends on Python 2 or 3) [Daniel Moore]
- [534] implement replica truncate [Daniel Moore]
- [584] load settings from environment even without use of config file [Daniel Moore]
- [600] Comment out test_files_query_case_sensitive BETWEEN tests [Alan King]
- [597] genquery2_test: Replace Postgres-specific assertions [Alan King]
- [566] Rename login_auth_test.py to prevent running with full suite [Alan King]
- [533][556] implement library features [Daniel Moore]
- [537] add --help option to the script setupssl.py [Daniel Moore]
- [574] rename progress_bar to updatables, allow for genericity [Daniel Moore]
- [574] Allow for tqdm progress bars to be used [Raoul Schram]
- [586] implement xml_mode() in a new irods.helpers module [Daniel Moore]
- [558] iRODSAccess: Handle non-str types in constructor [Alan King]
- [558] Add tests for iRODSAccess constructor type checking [Alan King]
- [567] return logging to normal after a run of the pool_test [Daniel Moore]
- [3][562] skip issue 562 (leaking connections) test for Python2 [Daniel Moore]
- [565] Descend Bad_AVU_Value from ValueError [Daniel Moore]
- [587] unique_name now hashes the call tuple for a random seed. [Daniel Moore]
- [3][525] allow touch API tests to run on Python 2 [Daniel Moore]
- [532,564,569] fix stored connections to match desired connection timeout. [Daniel Moore]
- [562] release old connection when redirecting [Daniel Moore]
- [576] test admin mode in metadata.apply_atomic_operations [Daniel Moore]
- [576] Add missing admin_mode in JSON message for metadata.apply_atomic_operations [Paul Borgermans]
- [571] exclude collection "/" from subcollections [Daniel Moore]
- [557] de-duplicate acl lists in case of multiple replicas. [Daniel Moore]
- [525] Add support for touch API operation. [Kory Draughn]
- [535] Implement basic support for GenQuery2 [Sietse Snel]
- [547] unify AVU field exceptions interface for metadata add and set [Daniel Moore]
- [550] Add support for client hints [Sietse Snel]

- [543] Fix issue with parallel downloads to a directory [Raoul Schram]
- [521] clearer documentation and errors regarding pam/pam_password [Daniel Moore]
- [518] preserve login_<auth-type> internally generated exceptions [Daniel Moore]
- [522][523] allow '=' and ';' in PAM passwords [Daniel Moore]
- [519] force verify mode to CERT_NONE if irods verify setting is explicitly none [Daniel Moore]
- [526] can now opt out of strong primes to speed up SSL & PAM tests [Daniel Moore]
- [3] make sure tempfile.mktemp imported where needed for tests [Daniel Moore]
- [3] tweak compatibility to iRODS 4.3.2 [Daniel Moore]
- [539] iRODS 4.3.2 rmgroup adaptation [Daniel Moore]

- [3] version bump for 2.0.0 [Terrell Russell]
- [3] update project description [Terrell Russell]
- [495] append modes seek to end on data_object.open(...) [Daniel Moore]
- [510] update README to reflect removal of session.permissions [Terrell Russell]
- [510] change permissions to acls [Daniel Moore]
- [504] modify replicate/trim code snippet and description [Daniel Moore]
- [459] respect the default_resource setting for replication [Daniel Moore]
- [484,509] Update version mentioned in README for Quota [Terrell Russell]
- [503] swap readme from .rst to markdown [Terrell Russell]
- [484] change to proper RST marker "::" in quotas section [Daniel Moore]
- [485][430][494] document new legacy_auth.pam.* settings [Daniel Moore]
- [501] context manager to temporarily alter settings [Daniel Moore]
- [430][494][498] client auth "plugins" / pam_password compatibility / TTL fix [Daniel Moore]
- [485] allow detection of config without actually loading it. [Daniel Moore]
- [462][399] Default the dataSize to 0 and prefer DATA_SIZE_KW over seek [Daniel Moore]
- [497] suppress fatal errors when loading configuration [Daniel Moore]
- [485][489] document available settings and override environment variables [Daniel Moore]
- [489] allow environment variable overrides of individual settings during autoload [Daniel Moore]
- [485] writeable_properties including xml parser [Daniel Moore]
- [484] Add quotas to README [Daniel Moore]
- [474][479] Allow querying, setting, and removing quotas [Daniel Moore]
- [483] make PRC version available as tuple [Daniel Moore]

- [471][472] allow save, load, and autoload of configuration [Daniel Moore]
- [456] auto-close data objects that go out of scope [Daniel Moore]
- [455] remove ticket check [Daniel Moore]
- [452] implement client redirection to resource server [Daniel Moore]
- [455] introduce low level ticket api changes [Daniel Moore]
- [234] Implement case-insensitive queries [Sietse Snel]